SMTL ID : 4gzf.1

Multi-drug resistant HIV-1 protease 769 variant with reduced LrF peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

1 x ARG- VAL- DC0- GLU- ALA- NLE: LrF peptide(Non-covalent)

ARG-VAL-DC0-GLU-ALA-NLE.1: 27 residues within 4Å: Chain A: L.23, N.25, G.27, A.28, D.29, D.30, V.32, L.46, I.47, G.48, G.49, I.50, P.81, T.82 Chain B: R.8, L.23, N.25, G.27, A.28, D.29, V.32, L.46, G.48, G.49, I.50, P.81, T.82 26 PLIP interactions: 14 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:V.32, A:I.47, A:P.81, A:T.82, B:L.23, B:A.28, B:P.81, B:T.82 Hydrogen bonds: A:G.27, A:D.29, A:D.30, A:G.48, A:G.48, B:N.25, B:G.27, B:D.29, B:L.46, B:G.48, B:G.48 Water bridges: A:D.29, A:D.30, A:I.50, B:D.30, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dewdney, T.G. et al., Ligand modifications to reduce the relative resistance of multi-drug resistant HIV-1 protease. Bioorg.Med.Chem. (2013)

Release Date

2013-10-30

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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