SMTL ID : 4gzn.1

Mouse ZFP57 zinc fingers in complex with methylated DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.99 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-functional Binders)

CA.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 1 residues within 4Å: Chain C: N.49 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:N.49 Water bridges: C:K.53 MPD.3: 3 residues within 4Å: Chain C: A.26, H.27, G.29 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain C: C.35, C.38, H.51, H.55 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.35, C:C.38, C:H.51, C:H.55 ZN.5: 4 residues within 4Å: Chain C: C.7, C.10, H.23, H.27 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.7, C:C.10, C:H.23, C:H.27

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 1 residues within 4Å: Chain C: H.55 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.54 Water bridges: C:E.37 Salt bridges: C:H.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence. Genes Dev. (2012)

Release Date

2012-10-17

Peptides

Zinc finger protein 57: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

Zinc finger protein 57