SMTL ID : 4h0i.1

Crystal Structure of Scfv-2D10 in Complex with Methyl Alpha-D-Mannopyranoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)

MMA.1: 9 residues within 4Å: Chain A: K.100, Y.102, S.105, H.170, Y.176, S.235, T.236, V.238, Y.240 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.176, A:Y.240, A:Y.240 Water bridges: A:Y.102, A:Y.176 Salt bridges: A:K.100

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain A: S.171, N.172 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain A: Y.61, K.66 No protein-ligand interaction detected (PLIP) MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Chain A: N.174 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tapryal, S. et al., Structural evaluation of a mimicry-recognizing paratope: plasticity in antigen-antibody interactions manifests in molecular mimicry. J.Immunol. (2013)

Release Date

2013-06-19

Peptides

2D10 scFv: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2D10 scFv

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