SMTL ID : 4h17.1

Crystal structure of an isochorismatase (PP1826) from Pseudomonas putida KT2440 at 1.60 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: D.30, Y.35, H.71, F.131, M.132, S.135, S.136 Chain B: M.8, N.186 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.35, A:S.135, A:S.135, A:S.136, B:N.186 Salt bridges: A:H.71 SO4.2: 6 residues within 4Å: Chain A: N.107, F.109, K.110, R.143, Y.147 Chain B: R.143 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.107, A:F.109, A:Y.147 Water bridges: A:N.111, A:N.111, B:R.143, B:R.143 Salt bridges: A:R.143, B:R.143 SO4.3: 8 residues within 4Å: Chain A: H.71, L.72, G.73, T.74, F.79, K.103, R.104 Chain B: R.14 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:L.72, A:G.73 Water bridges: A:H.71, B:R.14, B:R.14 Salt bridges: A:H.71, A:R.104, B:R.14 SO4.4: 5 residues within 4Å: Chain A: T.12, R.14 Chain B: T.74, G.77, R.78 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.74, B:R.78 Water bridges: B:H.71, B:R.78 Salt bridges: B:R.78, A:R.14 SO4.7: 6 residues within 4Å: Chain A: R.143 Chain B: N.107, F.109, K.110, R.143, Y.147 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.107 Water bridges: B:N.111, B:N.111, B:Y.147, B:Y.147, B:Y.147, A:R.143, A:R.143 Salt bridges: B:R.143, A:R.143 SO4.8: 7 residues within 4Å: Chain A: N.186 Chain B: D.30, Y.35, F.131, M.132, S.135, S.136 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.35, B:Y.35, B:S.135, B:S.136, A:N.186 Water bridges: B:R.78, B:R.78, B:R.78, B:S.136, B:S.136 Salt bridges: B:K.103

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: T.74, G.77, R.78 Chain B: L.11, T.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.74, A:T.74, A:R.78 EDO.6: 6 residues within 4Å: Chain A: S.43, G.44, A.159, T.160, A.173, H.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.160 Water bridges: A:A.173 EDO.9: 5 residues within 4Å: Chain B: S.43, A.159, T.160, A.173, H.176 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.43, B:T.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an isochorismatase (PP1826) from Pseudomonas putida KT2440 at 1.60 A resolution. To be published

Release Date

2012-11-14

Peptides

Hydrolase, isochorismatase family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydrolase, isochorismatase family