SMTL ID : 4h2n.1

Crystal structure of MHPCO, Y270F mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 28 residues within 4Å: Chain A: G.18, G.19, G.20, F.21, A.22, H.40, E.41, K.42, S.43, I.53, Y.54, R.106, S.128, E.129, A.130, A.155, D.156, G.157, L.179, R.181, G.287, D.288, P.295, A.298, Q.299, G.300, A.301, G.302 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:L.179, A:P.295, A:P.295 Hydrogen bonds: A:G.19, A:A.22, A:K.42, A:Y.54, A:Y.54, A:R.106, A:R.106, A:A.130, A:A.130, A:D.288, A:G.300, A:A.301, A:G.302 Water bridges: A:G.20, A:G.20, A:E.41, A:E.41, A:K.42, A:E.129, A:V.158, A:K.161, A:R.181, A:Y.223, A:D.288, A:D.288, A:D.288, A:A.289, A:A.289, A:Q.299 pi-Cation interactions: A:R.106 FAD.4: 28 residues within 4Å: Chain B: G.18, G.19, G.20, F.21, A.22, H.40, E.41, K.42, S.43, I.53, Y.54, R.106, S.128, E.129, A.130, A.155, D.156, G.157, L.179, R.181, G.287, D.288, P.295, A.298, Q.299, G.300, A.301, G.302 33 PLIP interactions: 33 interactions with chain B Hydrophobic interactions: B:L.179, B:P.295, B:P.295 Hydrogen bonds: B:G.19, B:A.22, B:K.42, B:Y.54, B:Y.54, B:R.106, B:R.106, B:A.130, B:A.130, B:D.288, B:G.300, B:A.301, B:G.302 Water bridges: B:G.20, B:G.20, B:E.41, B:E.41, B:K.42, B:E.129, B:V.158, B:K.161, B:R.181, B:Y.223, B:D.288, B:D.288, B:D.288, B:A.289, B:A.289, B:Q.299 pi-Cation interactions: B:R.106 FAD.7: 28 residues within 4Å: Chain C: G.18, G.19, G.20, F.21, A.22, H.40, E.41, K.42, S.43, I.53, Y.54, R.106, S.128, E.129, A.130, A.155, D.156, G.157, L.179, R.181, G.287, D.288, P.295, A.298, Q.299, G.300, A.301, G.302 32 PLIP interactions: 32 interactions with chain C Hydrophobic interactions: C:L.179, C:P.295, C:P.295 Hydrogen bonds: C:G.19, C:A.22, C:K.42, C:Y.54, C:Y.54, C:R.106, C:R.106, C:A.130, C:A.130, C:D.156, C:D.288, C:G.300, C:A.301, C:G.302 Water bridges: C:G.20, C:G.20, C:E.41, C:E.41, C:K.42, C:V.158, C:K.161, C:R.181, C:D.288, C:D.288, C:D.288, C:A.289, C:A.289, C:Q.299 pi-Cation interactions: C:R.106 FAD.10: 28 residues within 4Å: Chain D: G.18, G.19, G.20, F.21, A.22, H.40, E.41, K.42, S.43, I.53, Y.54, R.106, S.128, E.129, A.130, A.155, D.156, G.157, L.179, R.181, G.287, D.288, P.295, A.298, Q.299, G.300, A.301, G.302 32 PLIP interactions: 32 interactions with chain D Hydrophobic interactions: D:L.179, D:P.295, D:P.295 Hydrogen bonds: D:G.19, D:A.22, D:K.42, D:Y.54, D:Y.54, D:R.106, D:R.106, D:A.130, D:A.130, D:D.156, D:D.288, D:G.300, D:A.301, D:G.302 Water bridges: D:G.20, D:G.20, D:E.41, D:E.41, D:K.42, D:V.158, D:K.161, D:R.181, D:D.288, D:D.288, D:D.288, D:A.289, D:A.289, D:Q.299 pi-Cation interactions: D:R.106

4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 6 residues within 4Å: Chain A: W.173, F.270, T.272, C.294, P.295, A.347 No protein-ligand interaction detected (PLIP) BME.5: 6 residues within 4Å: Chain B: W.173, F.270, T.272, C.294, P.295, A.347 No protein-ligand interaction detected (PLIP) BME.8: 6 residues within 4Å: Chain C: W.173, F.270, T.272, C.294, P.295, A.347 No protein-ligand interaction detected (PLIP) BME.11: 6 residues within 4Å: Chain D: W.173, F.270, T.272, C.294, P.295, A.347 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.73, Q.74, G.75, S.76 Chain B: N.97, P.378, Q.379 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.75, A:S.76 GOL.6: 7 residues within 4Å: Chain A: N.97, P.378, Q.379 Chain B: L.73, Q.74, G.75, S.76 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.75, B:S.76 GOL.9: 7 residues within 4Å: Chain C: L.73, Q.74, G.75, S.76 Chain D: N.97, P.378, Q.379 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.75, C:S.76 GOL.12: 7 residues within 4Å: Chain C: N.97, P.378, Q.379 Chain D: L.73, Q.74, G.75, S.76 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.75, D:S.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kobayashi, J. et al., Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase. To be Published

Release Date

2013-09-18

Peptides

2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase

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