- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x UNL: UNKNOWN LIGAND
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.2: 6 residues within 4Å:- Chain A: Y.126, W.127, D.128, T.129, G.130, W.198
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.130
- Water bridges: A:S.167
1PE.3: 4 residues within 4Å:- Chain A: H.234, K.265, Y.266, G.267
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.266
- Water bridges: A:H.234
1PE.6: 6 residues within 4Å:- Chain A: H.44, D.45, Y.78, R.79, W.127
- Chain C: D.280
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.78
- Water bridges: A:R.79
1PE.11: 11 residues within 4Å:- Chain A: L.211, D.280
- Chain B: H.44, D.45, R.75, Y.78, R.79, W.127, E.165
- Ligands: UNL.10, 1PE.15
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:H.44, B:Y.78
- Water bridges: B:R.79, B:R.79
1PE.15: 7 residues within 4Å:- Chain B: Y.126, W.127, D.128, T.129, G.130, W.198
- Ligands: 1PE.11
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.128
1PE.18: 7 residues within 4Å:- Chain B: D.280
- Chain C: H.44, D.45, Y.78, R.79, W.127
- Ligands: 1PE.19
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:Y.78
- Water bridges: C:R.79, B:D.280, B:D.280
1PE.19: 9 residues within 4Å:- Chain C: Y.126, W.127, D.128, T.129, G.130, S.167, W.198, M.206
- Ligands: 1PE.18
No protein-ligand interaction detected (PLIP)- 2 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)
PE4.4: 8 residues within 4Å:- Chain A: I.136, E.137, K.140, Y.141, D.144, A.179, Q.183
- Ligands: PE4.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.140
PE4.5: 9 residues within 4Å:- Chain A: D.131, S.133, W.134, I.136, E.137, K.171, G.172, D.175
- Ligands: PE4.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.131
- 5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.7: 5 residues within 4Å:- Chain A: Y.88, K.91, K.92, E.137, Y.141
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.92
PG4.8: 7 residues within 4Å:- Chain A: R.178, A.179, K.182, G.232, E.235, V.236
- Ligands: PG4.9
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.178, A:R.178, A:R.178
- Water bridges: A:E.235
PG4.9: 6 residues within 4Å:- Chain A: K.182, K.185, D.186, E.235, V.236
- Ligands: PG4.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.182
PG4.16: 5 residues within 4Å:- Chain B: K.260, Q.269, G.304, Y.305, D.306
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.269
PG4.20: 11 residues within 4Å:- Chain C: D.69, T.70, N.113, M.114, K.115, K.155, S.156, F.157, G.158, L.191, K.307
No protein-ligand interaction detected (PLIP)- 2 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)
PG6.12: 9 residues within 4Å:- Chain B: D.69, N.113, M.114, K.115, K.155, S.156, F.157, G.158, L.191
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.115
PG6.13: 8 residues within 4Å:- Chain B: D.131, S.133, W.134, I.136, K.171, G.172, D.175
- Ligands: NA.14
No protein-ligand interaction detected (PLIP)- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a putative alpha-L-fucosidase (BT_0435) from Bacteroides thetaiotaomicron VPI-5482 at 1.80 A resolution. To be published
- Release Date
- 2012-10-10
- Peptides
- putative alpha-L-fucosidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x UNL: UNKNOWN LIGAND
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)
- 5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a putative alpha-L-fucosidase (BT_0435) from Bacteroides thetaiotaomicron VPI-5482 at 1.80 A resolution. To be published
- Release Date
- 2012-10-10
- Peptides
- putative alpha-L-fucosidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C