SMTL ID : 4h45.1

Product Complexes of Porcine Liver Fructose-1,6-bisphosphatase with Mutation E192Q

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 16 residues within 4Å: Chain A: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain B: R.243 Ligands: ZN.3, PO4.4 16 PLIP interactions: 12 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:N.212, A:Y.215, A:Y.244, A:M.248, A:Y.264, A:Y.264, A:K.274, A:R.276 Water bridges: A:K.274, B:R.243, B:R.243, B:R.243 Salt bridges: A:K.274, B:R.243 F6P.6: 16 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: ZN.8, PO4.9 16 PLIP interactions: 12 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:N.212, B:Y.215, B:Y.244, B:M.248, B:Y.264, B:Y.264, B:K.274, B:R.276 Water bridges: B:K.274, A:R.243, A:R.243, A:R.243 Salt bridges: B:K.274, A:R.243 F6P.11: 16 residues within 4Å: Chain C: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain D: R.243 Ligands: ZN.13, PO4.14 13 PLIP interactions: 4 interactions with chain D, 9 interactions with chain C Water bridges: D:R.243, D:R.243, D:R.243, C:K.274 Salt bridges: D:R.243, C:K.274 Hydrogen bonds: C:D.121, C:G.122, C:N.212, C:M.248, C:Y.264, C:K.274, C:R.276 F6P.16: 16 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: ZN.18, PO4.19 13 PLIP interactions: 9 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:N.212, D:M.248, D:Y.264, D:K.274, D:R.276 Water bridges: D:K.274, C:R.243, C:R.243, C:R.243 Salt bridges: D:K.274, C:R.243

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: E.97, D.118, P.119, L.120, D.121 Ligands: ZN.3, PO4.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.118, A:L.120 ZN.3: 8 residues within 4Å: Chain A: E.97, D.118, D.121, R.276, E.280 Ligands: F6P.1, ZN.2, PO4.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.118, A:E.280 ZN.7: 7 residues within 4Å: Chain B: E.97, D.118, P.119, L.120, D.121 Ligands: ZN.8, PO4.9 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.118, B:L.120 ZN.8: 8 residues within 4Å: Chain B: E.97, D.118, D.121, R.276, E.280 Ligands: F6P.6, ZN.7, PO4.9 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.118, B:E.280 ZN.12: 7 residues within 4Å: Chain C: E.97, D.118, P.119, L.120, D.121 Ligands: ZN.13, PO4.14 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.118, C:L.120 ZN.13: 8 residues within 4Å: Chain C: E.97, D.118, D.121, R.276, E.280 Ligands: F6P.11, ZN.12, PO4.14 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.118, C:E.280 ZN.17: 7 residues within 4Å: Chain D: E.97, D.118, P.119, L.120, D.121 Ligands: ZN.18, PO4.19 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.118, D:L.120 ZN.18: 8 residues within 4Å: Chain D: E.97, D.118, D.121, R.276, E.280 Ligands: F6P.16, ZN.17, PO4.19 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.118, D:E.280

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 11 residues within 4Å: Chain A: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276 Ligands: F6P.1, ZN.2, ZN.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.97, A:L.120, A:G.122, A:S.123 Salt bridges: A:R.276 PO4.5: 7 residues within 4Å: Chain A: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:Y.113 Salt bridges: A:K.112 PO4.9: 11 residues within 4Å: Chain B: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276 Ligands: F6P.6, ZN.7, ZN.8 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.97, B:L.120, B:G.122, B:S.123 Salt bridges: B:R.276 PO4.10: 7 residues within 4Å: Chain B: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:Y.113 Salt bridges: B:K.112 PO4.14: 11 residues within 4Å: Chain C: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276 Ligands: F6P.11, ZN.12, ZN.13 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.68, C:L.120, C:G.122, C:S.123 Salt bridges: C:R.276 PO4.15: 7 residues within 4Å: Chain C: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:T.27, C:G.28, C:E.29, C:M.30 Salt bridges: C:K.112 PO4.19: 11 residues within 4Å: Chain D: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276 Ligands: F6P.16, ZN.17, ZN.18 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:D.68, D:L.120, D:G.122, D:S.123 Salt bridges: D:R.276 PO4.20: 7 residues within 4Å: Chain D: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:T.27, D:G.28, D:E.29, D:M.30 Salt bridges: D:K.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, Y. et al., Dimer-dimer Interface in Porcine Liver Fructose-1,6-bisphosphatase is Essential in Cooperative Binding of AMP. To be Published

Release Date

2013-09-18

Peptides

Fructose-1,6-bisphosphatase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-1,6-bisphosphatase 1

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