- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.2: 36 residues within 4Å:- Chain A: G.14, A.15, G.16, L.17, A.18, V.38, G.39, D.40, E.41, R.48, P.49, S.52, V.80, T.81, A.82, A.108, T.109, G.110, A.111, L.129, R.130, I.156, E.159, N.240, L.243, G.272, D.273, E.289, T.290, W.291, A.294, Y.319, W.320, S.321
- Ligands: NDP.1, FMT.4
37 PLIP interactions:37 interactions with chain A- Hydrophobic interactions: A:R.48, A:L.129, A:I.156, A:I.156
- Hydrogen bonds: A:G.14, A:A.15, A:G.16, A:A.18, A:D.40, A:E.41, A:E.41, A:R.48, A:A.82, A:A.82, A:A.111, A:D.273, A:E.289, A:W.291, A:W.320
- Water bridges: A:L.17, A:L.17, A:S.19, A:S.19, A:D.40, A:D.40, A:R.48, A:R.48, A:R.130, A:N.240, A:D.273, A:V.274, A:V.274, A:S.292, A:D.322
- Salt bridges: A:R.48, A:R.130
- pi-Stacking: A:W.320
FAD.11: 36 residues within 4Å:- Chain B: G.14, A.15, G.16, L.17, A.18, V.38, G.39, D.40, E.41, R.48, P.49, S.52, V.80, T.81, A.82, A.108, T.109, G.110, A.111, L.129, R.130, I.156, E.159, N.240, L.243, G.272, D.273, E.289, T.290, W.291, A.294, Y.319, W.320, S.321
- Ligands: NDP.10, FMT.13
33 PLIP interactions:33 interactions with chain B- Hydrophobic interactions: B:R.48, B:L.129, B:I.156, B:I.156
- Hydrogen bonds: B:G.14, B:A.15, B:G.16, B:A.18, B:D.40, B:E.41, B:R.48, B:A.82, B:A.82, B:A.111, B:D.273, B:E.289, B:W.291, B:W.320
- Water bridges: B:L.17, B:L.17, B:S.19, B:S.19, B:R.48, B:R.48, B:R.130, B:N.240, B:V.274, B:V.274, B:S.292, B:D.322
- Salt bridges: B:R.48, B:R.130
- pi-Stacking: B:W.320
- 14 x FMT: FORMIC ACID(Non-functional Binders)
FMT.3: 5 residues within 4Å:- Chain A: F.55, G.59, D.60, A.61, R.136
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.61, A:R.136, A:R.136
FMT.4: 3 residues within 4Å:- Chain A: D.40, N.240
- Ligands: FAD.2
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.240
FMT.5: 5 residues within 4Å:- Chain A: R.262, P.266, D.267, Y.269
- Chain B: P.266
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.267, A:D.267, A:Y.269
- Water bridges: A:K.7, A:V.268
FMT.6: 2 residues within 4Å:- Chain A: P.49, P.50
No protein-ligand interaction detected (PLIP)FMT.7: 7 residues within 4Å:- Chain A: A.161, A.162, R.165, Y.196, H.197, Q.200, V.202
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.196
FMT.8: 4 residues within 4Å:- Chain A: A.8, P.9, G.33, L.34
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.34
FMT.9: 6 residues within 4Å:- Chain A: T.109, N.240, D.241, A.242, L.243, A.244
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.243, A:A.244
- Water bridges: A:N.240, A:A.242
FMT.12: 5 residues within 4Å:- Chain B: F.55, G.59, D.60, A.61, R.136
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.61, B:R.136, B:R.136
FMT.13: 3 residues within 4Å:- Chain B: D.40, N.240
- Ligands: FAD.11
2 PLIP interactions:2 interactions with chain B- Water bridges: B:D.40, B:N.240
FMT.14: 5 residues within 4Å:- Chain A: P.266
- Chain B: R.262, P.266, D.267, Y.269
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.267, B:Y.269
- Water bridges: B:K.7, B:V.268
FMT.15: 2 residues within 4Å:- Chain B: P.49, P.50
No protein-ligand interaction detected (PLIP)FMT.16: 7 residues within 4Å:- Chain B: A.161, A.162, R.165, Y.196, H.197, Q.200, V.202
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.197
FMT.17: 4 residues within 4Å:- Chain B: A.8, P.9, G.33, L.34
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.34
FMT.18: 6 residues within 4Å:- Chain B: T.109, N.240, D.241, A.242, L.243, A.244
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.243, B:A.244
- Water bridges: B:N.240, B:A.242
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nishizawa, A. et al., Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4. To be Published
- Release Date
- 2013-10-09
- Peptides
- Biphenyl dioxygenase ferredoxin reductase subunit: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 14 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nishizawa, A. et al., Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4. To be Published
- Release Date
- 2013-10-09
- Peptides
- Biphenyl dioxygenase ferredoxin reductase subunit: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A