- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 10 residues within 4Å:- Chain A: P.113, T.128, L.129, R.130, I.156, V.233, G.234, G.236, V.237
- Ligands: NAP.3
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.129, A:R.130, A:G.236
- Water bridges: A:I.235
GOL.13: 10 residues within 4Å:- Chain B: P.113, T.128, L.129, R.130, I.156, V.233, G.234, G.236, V.237
- Ligands: NAP.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.129, B:R.130, B:G.236
- Water bridges: B:I.235
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.3: 18 residues within 4Å:- Chain A: R.114, R.130, G.152, G.153, G.154, V.155, I.156, R.176, S.182, R.183, G.234, I.235, G.236, V.237, D.273, E.289
- Ligands: FAD.1, GOL.2
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:R.130, A:G.153, A:V.155, A:I.156, A:R.176, A:S.182, A:G.234, A:G.236, A:D.273, A:E.289
- Water bridges: A:G.154, A:G.154, A:M.181, A:M.181, A:S.182, A:V.237
- Salt bridges: A:R.176, A:R.183
- pi-Cation interactions: A:R.176, A:R.176
NAP.14: 18 residues within 4Å:- Chain B: R.114, R.130, G.152, G.153, G.154, V.155, I.156, R.176, S.182, R.183, G.234, I.235, G.236, V.237, D.273, E.289
- Ligands: FAD.12, GOL.13
21 PLIP interactions:21 interactions with chain B- Hydrogen bonds: B:R.130, B:G.153, B:V.155, B:I.156, B:R.176, B:S.182, B:G.234, B:G.236, B:D.273, B:E.289, B:E.289
- Water bridges: B:G.154, B:G.154, B:M.181, B:M.181, B:S.182, B:V.237
- Salt bridges: B:R.176, B:R.183
- pi-Cation interactions: B:R.176, B:R.176
- 16 x FMT: FORMIC ACID(Non-functional Binders)
FMT.4: 6 residues within 4Å:- Chain A: D.54, F.55, H.58, G.59, D.60, K.63
Ligand excluded by PLIPFMT.5: 7 residues within 4Å:- Chain A: A.122, T.123, M.124, S.213, V.214, D.215, G.216
Ligand excluded by PLIPFMT.6: 4 residues within 4Å:- Chain A: R.327, N.369, N.370, A.371
Ligand excluded by PLIPFMT.7: 2 residues within 4Å:- Chain A: W.320, D.322
Ligand excluded by PLIPFMT.8: 4 residues within 4Å:- Chain A: A.115, L.116, V.126, V.233
Ligand excluded by PLIPFMT.9: 5 residues within 4Å:- Chain A: D.40, G.79, V.80, T.81, S.95
Ligand excluded by PLIPFMT.10: 5 residues within 4Å:- Chain A: F.55, G.59, D.60, A.61, R.136
Ligand excluded by PLIPFMT.11: 3 residues within 4Å:- Chain A: D.40, N.240
- Ligands: FAD.1
Ligand excluded by PLIPFMT.15: 6 residues within 4Å:- Chain B: D.54, F.55, H.58, G.59, D.60, K.63
Ligand excluded by PLIPFMT.16: 7 residues within 4Å:- Chain B: A.122, T.123, M.124, S.213, V.214, D.215, G.216
Ligand excluded by PLIPFMT.17: 4 residues within 4Å:- Chain B: R.327, N.369, N.370, A.371
Ligand excluded by PLIPFMT.18: 2 residues within 4Å:- Chain B: W.320, D.322
Ligand excluded by PLIPFMT.19: 4 residues within 4Å:- Chain B: A.115, L.116, V.126, V.233
Ligand excluded by PLIPFMT.20: 5 residues within 4Å:- Chain B: D.40, G.79, V.80, T.81, S.95
Ligand excluded by PLIPFMT.21: 5 residues within 4Å:- Chain B: F.55, G.59, D.60, A.61, R.136
Ligand excluded by PLIPFMT.22: 3 residues within 4Å:- Chain B: D.40, N.240
- Ligands: FAD.12
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nishizawa, A. et al., Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4. To be Published
- Release Date
- 2013-10-09
- Peptides
- Biphenyl dioxygenase ferredoxin reductase subunit: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 16 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nishizawa, A. et al., Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4. To be Published
- Release Date
- 2013-10-09
- Peptides
- Biphenyl dioxygenase ferredoxin reductase subunit: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A