SMTL ID : 4h5b.3 (2 other biounits)

Crystal Structure of DR_1245 from Deinococcus radiodurans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Q.21, G.36, R.38 Chain B: T.110 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:Q.21, A:G.36 Hydrogen bonds: B:T.110 GOL.2: 4 residues within 4Å: Chain A: D.95, Q.96, E.97, W.101 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.96, A:E.97 Water bridges: A:E.97, B:T.3 GOL.6: 6 residues within 4Å: Chain B: A.71, D.72, R.73, R.74, A.75, E.76 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.74, B:A.75, B:E.76 GOL.7: 4 residues within 4Å: Chain B: R.84, R.88, D.132, A.136 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.84, B:R.84, B:R.88, B:R.88 GOL.8: 6 residues within 4Å: Chain B: A.78, L.81, N.82, N.85, R.92, S.93 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.78, B:N.82, B:N.82, B:N.85

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: T.69, Y.70, A.71, D.72 Chain B: K.13, Q.16 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.69, A:A.71, A:D.72, B:Q.16 Water bridges: A:T.69, A:T.69 Salt bridges: B:K.13 SO4.4: 3 residues within 4Å: Chain A: R.88, A.89, H.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.89 Water bridges: A:E.87 Salt bridges: A:H.129

1 x BR: BROMIDE ION(Non-covalent)

BR.5: 4 residues within 4Å: Chain B: F.90, A.91, E.103, V.105 Ligand excluded by PLIP

1 x K: POTASSIUM ION(Non-covalent)

K.9: 3 residues within 4Å: Chain B: R.88, A.89, H.129 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Norais, C. et al., The Deinococcus radiodurans DR1245 Protein, a DdrB Partner Homologous to YbjN Proteins and Reminiscent of Type III Secretion System Chaperones. Plos One (2013)

Release Date

2013-01-30

Peptides

DR_1245 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

DR_1245 protein

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