SMTL ID : 4h5u.1 (1 other biounit)

Structural insights into yeast Nit2: wild-type yeast Nit2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: D.121, D.150, L.156, P.194 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.121 Water bridges: A:D.150, A:D.150 GOL.2: 3 residues within 4Å: Chain A: D.189, I.190, M.218 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.189, A:D.189, A:I.190 Water bridges: A:M.218 GOL.3: 4 residues within 4Å: Chain A: N.119, H.151, P.194 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.121, A:D.121 GOL.4: 5 residues within 4Å: Chain A: R.216, R.326, N.327, P.330, N.333 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.216, A:R.326, A:N.327 Water bridges: A:R.216, A:Q.250, A:Q.323, A:N.327 GOL.5: 4 residues within 4Å: Chain B: C.48, G.260, M.261, V.308 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.261, B:M.261 GOL.6: 6 residues within 4Å: Chain A: A.236, H.237 Chain B: R.243, W.296, G.297, K.298 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.243, A:H.237 Water bridges: B:G.297, B:I.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., Structures of enzyme-intermediate complexes of yeast Nit2: insights into its catalytic mechanism and different substrate specificity compared with mammalian Nit2. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-07-31

Peptides

Probable hydrolase NIT2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Probable hydrolase NIT2

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