SMTL ID : 4h8a.1

Crystal structure of ureidoglycolate dehydrogenase in binary complex with NADH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 24 residues within 4Å: Chain A: I.43, H.46, H.118, G.120, A.121, I.122, C.140, S.142, T.158, P.160, F.175, D.176, M.177, A.178, A.183, Y.305, Y.306, P.307, G.308, D.310, Q.311 Chain B: F.149, P.225, K.226 30 PLIP interactions: 26 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:P.160 Hydrogen bonds: A:G.120, A:I.122, A:S.142, A:D.176, A:D.176, A:D.176, A:A.178, A:A.183, A:G.308 Water bridges: A:R.41, A:S.119, A:S.142, A:D.143, A:K.186, A:K.186, A:Y.305, A:D.310, A:Q.311, A:Q.311, A:Q.311, A:Q.311, A:Q.311, A:Q.311, A:Q.311, A:Q.311, B:K.226, B:K.226 Salt bridges: B:K.226, B:K.226 NAI.2: 24 residues within 4Å: Chain A: F.149, P.225, K.226 Chain B: I.43, H.46, H.118, G.120, A.121, I.122, C.140, S.142, T.158, P.160, F.175, D.176, M.177, A.178, A.183, Y.305, Y.306, P.307, G.308, D.310, Q.311 24 PLIP interactions: 21 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:P.160 Hydrogen bonds: B:G.120, B:I.122, B:S.142, B:D.176, B:D.176, B:D.176, B:A.178, B:A.183, B:G.308 Water bridges: B:R.41, B:S.119, B:Q.182, B:Q.182, B:K.186, B:Y.305, B:Q.311, B:Q.311, B:Q.311, B:Q.311, B:Q.311, A:K.226 Salt bridges: A:K.226, A:K.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.I. et al., Structural and functional insights into (s)-ureidoglycolate dehydrogenase, a metabolic branch point enzyme in nitrogen utilization. Plos One (2012)

Release Date

2013-01-16

Peptides

Ureidoglycolate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ureidoglycolate dehydrogenase