SMTL ID : 4h9s.3 (2 other biounits)

Complex structure 6 of DAXX/H3.3(sub7)/H4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-2-mer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: L.61, I.62, R.63 Chain C: I.10, T.11, A.14 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:T.11, A:L.61, A:R.63 Salt bridges: A:R.63 PO4.2: 7 residues within 4Å: Chain B: I.62, R.63, P.66 Chain D: G.9, I.10, T.11, A.14 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain B Hydrogen bonds: D:T.11, B:R.63, B:R.63 Salt bridges: B:R.63 PO4.3: 7 residues within 4Å: Chain A: A.47, L.48, R.49 Chain E: T.80, R.81, Y.82, M.130 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:L.48, A:R.49, E:R.81, E:Y.82 Water bridges: A:R.49 PO4.4: 7 residues within 4Å: Chain B: V.46, A.47, L.48 Chain F: G.79, T.80, R.81, Y.82 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:R.81, B:L.48 PO4.5: 7 residues within 4Å: Chain A: R.52 Chain F: G.68, R.69, V.70, D.149, Y.152, N.153 8 PLIP interactions: 4 interactions with chain F, 3 interactions with chain A, 1 interactions with chain E Hydrogen bonds: F:R.69, F:V.70, F:D.149, F:N.153, E:D.137 Water bridges: A:R.52, A:R.52 Salt bridges: A:R.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elsasser, S.J. et al., DAXX chaperone envelops an H3.3/H4 dimer dictating H3.3-specific read out. To be Published

Release Date

2012-10-17

Peptides

Histone H3.3: AB
Histone H4: CD
Death domain-associated protein 6: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Histone H3.3

Histone H4

Death domain-associated protein 6

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