SMTL ID : 4hae.1

Crystal structure of the CDYL2-chromodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: R.28, R.45, S.51 Chain B: R.28, R.45, S.51 Ligands: SO4.9 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Water bridges: A:R.28, A:R.45, A:S.51, B:R.28, B:R.28, B:R.45 Salt bridges: A:R.28, A:R.45, B:R.28, B:R.45 SO4.9: 7 residues within 4Å: Chain A: R.28, R.45, S.51 Chain B: R.28, R.45, S.51 Ligands: SO4.1 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Water bridges: A:R.28, A:R.28, A:R.45, B:R.28, B:R.45, B:S.51 Salt bridges: A:R.28, A:R.45, B:R.28, B:R.45

14 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 7 residues within 4Å: Chain A: I.44, R.45, W.46, Y.49, G.50, E.53, D.54 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: I.29, D.31 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: N.35, K.36, K.37 No protein-ligand interaction detected (PLIP) UNX.5: 2 residues within 4Å: Chain A: E.27, R.28 No protein-ligand interaction detected (PLIP) UNX.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.7: 3 residues within 4Å: Chain A: G.50, S.51, T.52 No protein-ligand interaction detected (PLIP) UNX.8: 3 residues within 4Å: Chain A: S.20, D.22, Y.24 No protein-ligand interaction detected (PLIP) UNX.10: 7 residues within 4Å: Chain B: I.44, R.45, W.46, Y.49, G.50, E.53, D.54 No protein-ligand interaction detected (PLIP) UNX.11: 2 residues within 4Å: Chain B: I.29, D.31 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain B: N.35, K.36, K.37 No protein-ligand interaction detected (PLIP) UNX.13: 2 residues within 4Å: Chain B: E.27, R.28 No protein-ligand interaction detected (PLIP) UNX.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.15: 3 residues within 4Å: Chain B: G.50, S.51, T.52 No protein-ligand interaction detected (PLIP) UNX.16: 3 residues within 4Å: Chain B: S.20, D.22, Y.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qin, S. et al., Crystal structure of the CDYL2-chromodomain. To be Published

Release Date

2012-10-10

Peptides

Chromodomain Y-like protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Chromodomain Y-like protein 2