SMTL ID : 4har.2 (2 other biounits)

Crystal Structure of Rubella virus capsid protein (residues 127-277)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

homo-dimer

Ligands

2 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.1: 8 residues within 4Å: Chain A: W.31, W.33, F.41, R.99, Y.101, L.116 Chain B: M.67, Y.68 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:Y.68, A:W.31, A:W.33, A:Y.101, A:L.116 pi-Cation interactions: A:W.33, A:F.41 LDA.3: 2 residues within 4Å: Chain B: M.67, Y.68 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:M.67, B:Y.68, B:Y.68

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain B: Y.83 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mangala Prasad, V. et al., Rubella virus capsid protein structure and its role in virus assembly and infection. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-12-11

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Capsid protein

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