SMTL ID : 4hbm.10 (11 other biounits)

Ordering of the N Terminus of Human MDM2 by Small Molecule Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x 0Y7: {(3R,5R,6S)-5-(3-chlorophenyl)-6-(4-chlorophenyl)-1-[(2S)-1-hydroxybutan-2-yl]-2-oxopiperidin-3-yl}acetic acid(Non-covalent)

0Y7.1: 15 residues within 4Å: Chain A: V.9, T.10, T.11, L.49, L.52, G.53, I.56, V.88, K.89, H.91, I.94, Y.95 Chain B: T.5, F.50, Q.54 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.9, A:T.11, A:L.49, A:L.49, A:I.56, A:I.56, A:V.88, A:V.88, A:I.94 Hydrogen bonds: A:V.88 Water bridges: A:K.89, A:K.89, B:Q.54 Salt bridges: A:K.89, A:H.91 pi-Stacking: A:H.91 Halogen bonds: A:H.91 0Y7.2: 13 residues within 4Å: Chain A: Q.54 Chain B: V.9, T.11, L.49, L.52, G.53, I.56, Y.62, V.88, K.89, H.91, I.94, Y.95 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:V.9, B:T.11, B:L.49, B:L.49, B:I.56, B:I.56, B:Y.62, B:V.88, B:I.94 Hydrogen bonds: B:V.88, A:Q.54 Water bridges: B:Q.13, A:Q.54 Salt bridges: B:K.89, B:H.91 pi-Stacking: B:H.91 Halogen bonds: B:H.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michelsen, K. et al., Ordering of the N-terminus of human MDM2 by small molecule inhibitors. J.Am.Chem.Soc. (2012)

Release Date

2012-10-17

Peptides

E3 ubiquitin-protein ligase Mdm2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

E3 ubiquitin-protein ligase Mdm2

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