SMTL ID : 4hc6.1

Mycobacterium tuberculosis Rv2523cE77A x-ray structure solved with 1.8 angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: W.53, E.57 Chain C: Q.70, R.71 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:R.71 Water bridges: C:R.67, A:H.79 GOL.14: 4 residues within 4Å: Chain A: Q.70, R.71 Chain B: W.53, E.57 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.71 Water bridges: A:R.67, B:H.79 GOL.27: 4 residues within 4Å: Chain B: Q.70, R.71 Chain C: W.53, E.57 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:R.71 Water bridges: B:R.67, C:H.79

21 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: P.92, S.112, L.113 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: D.87, M.88 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: V.10, S.11 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: A.27, F.30, T.31, P.32, R.35 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: A.76 Chain B: A.76 Chain C: A.76 Ligands: CL.19, CL.32 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: R.67, Q.70 Chain B: T.24, V.25 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: D.8, K.61 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: P.92, S.112, L.113 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain B: D.87, M.88 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain B: V.10, S.11 Ligand excluded by PLIP CL.18: 5 residues within 4Å: Chain B: A.27, F.30, T.31, P.32, R.35 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain A: A.76 Chain B: A.76 Chain C: A.76 Ligands: CL.6, CL.32 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain B: R.67, Q.70 Chain C: T.24, V.25 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain B: D.8, K.61 Ligand excluded by PLIP CL.28: 3 residues within 4Å: Chain C: P.92, S.112, L.113 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain C: D.87, M.88 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain C: V.10, S.11 Ligand excluded by PLIP CL.31: 5 residues within 4Å: Chain C: A.27, F.30, T.31, P.32, R.35 Ligand excluded by PLIP CL.32: 5 residues within 4Å: Chain A: A.76 Chain B: A.76 Chain C: A.76 Ligands: CL.6, CL.19 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain A: T.24, V.25 Chain C: R.67, Q.70 Ligand excluded by PLIP CL.34: 2 residues within 4Å: Chain C: D.8, K.61 Ligand excluded by PLIP

6 x NA: SODIUM ION(Non-functional Binders)

NA.9: 2 residues within 4Å: Chain A: H.110 Ligands: NA.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.111, A:V.111 NA.10: 2 residues within 4Å: Chain A: V.111 Ligands: NA.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.111 Water bridges: A:V.111 NA.22: 2 residues within 4Å: Chain B: H.110 Ligands: NA.23 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.110, B:V.111, B:V.111 NA.23: 2 residues within 4Å: Chain B: V.111 Ligands: NA.22 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.111 Water bridges: B:V.111 NA.35: 2 residues within 4Å: Chain C: H.110 Ligands: NA.36 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.111, C:V.111 NA.36: 2 residues within 4Å: Chain C: V.111 Ligands: NA.35 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.111 Water bridges: C:V.111

9 x BR: BROMIDE ION(Non-covalent)

BR.11: 4 residues within 4Å: Chain A: S.64, R.67, P.72, V.73 Ligand excluded by PLIP BR.12: 4 residues within 4Å: Chain A: E.28, D.77, R.80 Chain C: Y.103 Ligand excluded by PLIP BR.13: 4 residues within 4Å: Chain A: R.52, K.56, E.83, V.84 Ligand excluded by PLIP BR.24: 4 residues within 4Å: Chain B: S.64, R.67, P.72, V.73 Ligand excluded by PLIP BR.25: 4 residues within 4Å: Chain A: Y.103 Chain B: E.28, D.77, R.80 Ligand excluded by PLIP BR.26: 4 residues within 4Å: Chain B: R.52, K.56, E.83, V.84 Ligand excluded by PLIP BR.37: 4 residues within 4Å: Chain C: S.64, R.67, P.72, V.73 Ligand excluded by PLIP BR.38: 4 residues within 4Å: Chain B: Y.103 Chain C: E.28, D.77, R.80 Ligand excluded by PLIP BR.39: 4 residues within 4Å: Chain C: R.52, K.56, E.83, V.84 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.-B. et al., Mycobacterium tuberculosis Rv2523cE77A x-ray structure solved with 1.8 angstrom resolution. To be Published

Release Date

2012-11-28

Peptides

Holo-[acyl-carrier-protein] synthase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Holo-[acyl-carrier-protein] synthase