SMTL ID : 4hcn.1

Crystal structure of Burkholderia pseudomallei effector protein CHBP in complex with ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: G.164, A.165, P.167, K.220, D.222, K.225 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.225

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: R.8, N.126, D.240, F.241 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.8, A:R.8, A:N.126, A:F.241 FMT.4: 6 residues within 4Å: Chain A: L.69 Chain B: I.66, F.67, A.68, T.88, H.90 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.68, B:H.90, B:H.90

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: A.73 Chain B: R.64, R.94, L.95, R.96, G.97 9 PLIP interactions: 1 interactions with chain A, 8 interactions with chain B Water bridges: A:D.74, B:R.64, B:R.64, B:R.96 Hydrogen bonds: B:L.95, B:G.97 Salt bridges: B:R.64, B:R.94, B:R.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, Q. et al., Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-11-21

Peptides

Putative ATP/GTP binding protein: A
Polyubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative ATP/GTP binding protein

Polyubiquitin

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