SMTL ID : 4hda.2 (1 other biounit)

Crystal structure of human Sirt5 in complex with Fluor-de-Lys peptide and resveratrol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x HIS- LYS- FDL: Fluor-de-Lys peptide(Non-covalent)

HIS-LYS-FDL.1: 14 residues within 4Å: Chain A: R.44, Y.75, I.115, H.131, V.193, V.194, F.196, G.197, E.198, N.199, L.200, V.227, Y.228 Ligands: STL.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.115, A:V.193, A:F.196, A:F.196, A:V.227, A:Y.228 Hydrogen bonds: A:H.131, A:G.197, A:E.198, A:N.199, A:L.200

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.139, C.142, C.180, C.185 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.139, A:C.142, A:C.180, A:C.185

1 x STL: RESVERATROL(Non-covalent)

STL.3: 4 residues within 4Å: Chain A: G.45, T.251, T.252 Ligands: HIS-LYS-FDL.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gertz, M. et al., A molecular mechanism for direct sirtuin activation by resveratrol. Plos One (2012)

Release Date

2012-12-05

Peptides

NAD-dependent protein deacylase sirtuin-5, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NAD-dependent protein deacylase sirtuin-5, mitochondrial

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