SMTL ID : 4hdd.2 (1 other biounit)

Domain swapping in the cytoplasmic domain of the Escherichia coli rhomboid protease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-octamer

Ligands

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: E.50, R.53 Chain E: Y.18, Q.22 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain E Water bridges: A:R.62 Salt bridges: A:R.53 Hydrogen bonds: E:Y.18 ACT.2: 4 residues within 4Å: Chain B: E.50, R.53 Chain F: Y.18, Q.22 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain F Water bridges: B:R.62 Salt bridges: B:R.53 Hydrogen bonds: F:Y.18 ACT.3: 4 residues within 4Å: Chain C: E.50, R.53 Chain H: Y.18, Q.22 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain H Water bridges: C:R.62 Salt bridges: C:R.53 Hydrogen bonds: H:Y.18 ACT.4: 4 residues within 4Å: Chain D: E.50, R.53 Chain G: Y.18, Q.22 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain D Hydrogen bonds: G:Y.18 Water bridges: D:R.62 Salt bridges: D:R.53 ACT.5: 4 residues within 4Å: Chain A: Y.18, Q.22 Chain E: E.50, R.53 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:Y.18 Water bridges: E:R.62 Salt bridges: E:R.53 ACT.6: 4 residues within 4Å: Chain B: Y.18, Q.22 Chain F: E.50, R.53 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B Water bridges: F:R.62 Salt bridges: F:R.53 Hydrogen bonds: B:Y.18 ACT.7: 4 residues within 4Å: Chain D: Y.18, Q.22 Chain G: E.50, R.53 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain D Water bridges: G:R.62 Salt bridges: G:R.53 Hydrogen bonds: D:Y.18 ACT.8: 4 residues within 4Å: Chain C: Y.18, Q.22 Chain H: E.50, R.53 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain C Water bridges: H:R.62 Salt bridges: H:R.53 Hydrogen bonds: C:Y.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lazareno-Saez, C. et al., Domain swapping in the cytoplasmic domain of the Escherichia coli rhomboid protease. J.Mol.Biol. (2013)

Release Date

2013-02-06

Peptides

Rhomboid protease GlpG: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Rhomboid protease GlpG

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