SMTL ID : 4hgz.1

Structure of the CcbJ Methyltransferase from Streptomyces caelestis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.257 Chain E: R.257, R.258 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:R.258 Salt bridges: A:R.257 SO4.2: 5 residues within 4Å: Chain A: G.145, Q.146, D.147, A.205, R.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.146, A:D.147 Salt bridges: A:R.229 SO4.3: 2 residues within 4Å: Chain A: R.129, E.158 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.129 Salt bridges: A:R.129 SO4.4: 4 residues within 4Å: Chain B: R.257, R.258 Chain D: R.257, R.258 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:R.258, B:R.258 Water bridges: B:R.258 SO4.10: 3 residues within 4Å: Chain A: R.257, R.258 Chain E: R.257 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:R.258 Salt bridges: E:R.257 SO4.11: 2 residues within 4Å: Chain E: R.129, E.158 2 PLIP interactions: 2 interactions with chain E Water bridges: E:E.127 Salt bridges: E:R.129 SO4.13: 3 residues within 4Å: Chain C: R.257, R.258 Chain F: R.257 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:R.258 Salt bridges: F:R.257 SO4.14: 3 residues within 4Å: Chain C: R.257 Chain F: R.257, R.258 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain F Salt bridges: C:R.257, F:R.258 Hydrogen bonds: F:R.258

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain B: Q.146, D.147, R.229 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.146, B:D.147, B:D.147 EDO.7: 4 residues within 4Å: Chain C: G.145, Q.146, D.147, R.229 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.146, C:D.147, C:D.147, C:R.229 EDO.9: 4 residues within 4Å: Chain D: G.145, Q.146, D.147, R.229 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.146, D:D.147, D:E.148, D:R.229 EDO.12: 4 residues within 4Å: Chain E: G.145, Q.146, D.147, R.229 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:Q.146, E:D.147, E:D.147, E:R.229

2 x LI: LITHIUM ION(Non-covalent)

LI.6: 5 residues within 4Å: Chain C: A.58, A.59, L.60, A.61, A.62 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:A.58, C:A.59 LI.8: 3 residues within 4Å: Chain D: G.219 Chain E: G.219 Chain F: G.219 3 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain F Metal complexes: E:G.219, D:G.219, F:G.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bauer, J. et al., Structure and possible mechanism of the CcbJ methyltransferase from Streptomyces caelestis. Acta Crystallogr.,Sect.D (2014)

Release Date

2013-10-30

Peptides

CcbJ: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

CcbJ

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