SMTL ID : 4hit.1

Crystal structure of H112W mutant of borna disease virus matrix protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-12-mer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: K.56, L.57, R.124, L.125 Chain E: F.121 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: S.33, R.34 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain E: K.56, L.57, R.124, L.125 Chain I: F.121 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain F: S.33, R.34 Ligand excluded by PLIP CL.23: 5 residues within 4Å: Chain A: F.121 Chain I: K.56, L.57, R.124, L.125 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain J: S.33, R.34 Ligand excluded by PLIP

27 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: N.106, K.107 Chain D: K.107 Ligands: SO4.11 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain B: K.107 Chain C: L.72, N.106, K.107, E.108 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain B: K.11, K.13 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain C: L.125, R.126, N.127 Ligand excluded by PLIP SO4.7: 1 residues within 4Å: Chain C: E.54 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: Q.36, K.111 Chain C: K.111, W.112 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain D: D.80, D.81, K.99 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain D: Q.50, R.126, N.127 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain A: K.107 Chain B: K.107 Chain D: K.107 Ligands: SO4.2 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain E: N.106, K.107 Chain H: K.107 Ligands: SO4.22 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain F: K.107 Chain G: L.72, N.106, K.107, E.108 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain F: K.11, K.13 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain G: L.125, R.126, N.127 Ligand excluded by PLIP SO4.18: 1 residues within 4Å: Chain G: E.54 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain F: Q.36, K.111 Chain G: K.111, W.112 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain H: D.80, D.81, K.99 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain H: Q.50, R.126, N.127 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain E: K.107 Chain F: K.107 Chain H: K.107 Ligands: SO4.13 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain I: N.106, K.107 Chain L: K.107 Ligands: SO4.33 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Chain J: K.107 Chain K: L.72, N.106, K.107, E.108 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain J: K.11, K.13 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain K: L.125, R.126, N.127 Ligand excluded by PLIP SO4.29: 1 residues within 4Å: Chain K: E.54 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain J: Q.36, K.111 Chain K: K.111, W.112 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain L: D.80, D.81, K.99 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain L: Q.50, R.126, N.127 Ligand excluded by PLIP SO4.33: 4 residues within 4Å: Chain I: K.107 Chain J: K.107 Chain L: K.107 Ligands: SO4.24 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dautel, P. et al., Matrix protein variants provide support for alternative borna disease virus infection pathway. To be Published

Release Date

2013-10-30

Peptides

Matrix protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
C

D
B

E
A

F
D

G
C

H
B

I
A

J
D

K
C

L
B

Matrix protein

Related Entries With Identical Sequence