SMTL ID : 4hiu.1

Crystal structure of R34/53A mutant of borna disease virus matrix protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-tetramer

Ligands

4 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.1: 8 residues within 4Å: Chain A: Q.36, F.37, L.38, H.112 Chain C: K.111, N.115 Ligands: C5P.5, C5P.7 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:F.37, A:H.112, C:K.111, C:N.115 pi-Stacking: A:F.37, A:H.112 C5P.3: 8 residues within 4Å: Chain B: Q.36, F.37, L.38, H.112 Chain D: K.111, N.115 Ligands: C5P.5, C5P.7 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain B Hydrogen bonds: D:K.111, D:N.115, B:F.37 pi-Stacking: B:F.37, B:H.112 C5P.5: 8 residues within 4Å: Chain B: K.111, N.115 Chain C: Q.36, F.37, L.38, H.112 Ligands: C5P.1, C5P.3 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:F.37, C:H.112, B:K.111, B:N.115 pi-Stacking: C:F.37, C:H.112 C5P.7: 8 residues within 4Å: Chain A: K.111, N.115 Chain D: Q.36, F.37, L.38, H.112 Ligands: C5P.1, C5P.3 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:F.37, A:K.111, A:N.115 pi-Stacking: D:F.37, D:H.112

4 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.2: 12 residues within 4Å: Chain A: I.63, D.64, V.65, E.66, A.117, F.118, N.119, V.120 Chain D: I.128, G.129, V.130, G.131 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:V.65, A:V.65, A:V.120, D:G.129 Salt bridges: A:D.64, A:E.66 5GP.4: 12 residues within 4Å: Chain B: I.63, D.64, V.65, E.66, A.117, F.118, N.119, V.120 Chain C: I.128, G.129, V.130, G.131 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain B Hydrogen bonds: C:G.129, B:V.65, B:V.65, B:V.120 Salt bridges: B:D.64, B:E.66 5GP.6: 12 residues within 4Å: Chain A: I.128, G.129, V.130, G.131 Chain C: I.63, D.64, V.65, E.66, A.117, F.118, N.119, V.120 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:V.65, C:V.65, C:V.120, A:G.129 Salt bridges: C:D.64, C:E.66 5GP.8: 12 residues within 4Å: Chain B: I.128, G.129, V.130, G.131 Chain D: I.63, D.64, V.65, E.66, A.117, F.118, N.119, V.120 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:V.65, D:V.65, D:V.120, B:G.129 Salt bridges: D:D.64, D:E.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dautel, P. et al., Matrix protein variants provide support for alternative borna disease virus infection pathway. To be Published

Release Date

2013-10-30

Peptides

Matrix protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Matrix protein