SMTL ID : 4hj1.2 (1 other biounit)

Crystal structure of glycoprotein C from Rift Valley Fever Virus (glycosylated)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- BMA- BMA: beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-BMA-BMA.1: 9 residues within 4Å: Chain A: D.1, P.2, G.3, S.5, G.40, N.348, R.360, C.362, D.394 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.2 Hydrogen bonds: A:R.360 NAG-NAG-BMA-BMA-BMA.2: 11 residues within 4Å: Chain B: P.2, G.3, S.5, V.39, G.40, K.317, L.347, N.348, R.360, C.362, D.394 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.317, B:R.360 Hydrophobic interactions: B:P.2 Water bridges: B:S.38

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.107 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.107 NAG.6: 2 residues within 4Å: Chain B: R.105, N.107 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.105

3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 6 residues within 4Å: Chain A: R.88, R.89, C.90, V.93, G.137, D.274 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.88, A:C.90 Salt bridges: A:R.89 MES.7: 5 residues within 4Å: Chain B: R.88, R.89, C.90, V.93, D.274 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.88, B:C.90 Salt bridges: B:R.89 MES.8: 4 residues within 4Å: Chain B: H.91, H.97, V.98, N.142 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.98 Water bridges: B:N.99 Salt bridges: B:H.91, B:H.97

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: G.78, S.79, F.80, L.282, I.283, D.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.78, A:F.80, A:F.80 GOL.9: 6 residues within 4Å: Chain B: G.78, S.79, F.80, L.282, I.283, D.284 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.78, B:F.80, B:F.80 GOL.10: 7 residues within 4Å: Chain B: K.224, G.225, Y.226, F.289, S.293, L.294, A.305 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.226, B:N.309 Water bridges: B:K.224, B:K.224, B:E.290, B:A.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dessau, M. et al., Crystal structure of glycoprotein C from Rift Valley fever virus. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-01-16

Peptides

ENVELOPE GLYCOPROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

ENVELOPE GLYCOPROTEIN

Related Entries With Identical Sequence