SMTL ID : 4hkf.1

Crystal structure of Danio rerio MEC-17 catalytic domain in complex with acetyl-CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.1: 23 residues within 4Å: Chain A: Q.55, V.117, D.119, F.120, Y.121, V.122, Q.127, R.128, H.129, G.130, Y.131, G.132, S.133, D.153, R.154, P.155, S.156, K.158, F.159, S.161, F.162, K.165 Ligands: SO4.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:V.117, A:F.120, A:Y.121, A:F.159 Hydrogen bonds: A:F.120, A:V.122, A:Q.127, A:R.128, A:R.128, A:G.130, A:Y.131, A:G.132, A:S.133, A:S.156, A:K.165, A:K.165 Water bridges: A:L.126, A:Q.127, A:R.128, A:R.128, A:R.128, A:R.128, A:R.128, A:H.129, A:K.158, A:S.161 Salt bridges: A:R.128, A:K.165 pi-Cation interactions: A:R.128, A:R.128

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.128, K.165 Ligands: ACO.1 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.128, A:R.128 Salt bridges: A:R.128, A:K.165 SO4.3: 4 residues within 4Å: Chain A: D.8, G.84, G.85, R.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.8, A:G.85 Water bridges: A:N.10 SO4.4: 3 residues within 4Å: Chain A: P.6, D.8, R.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.8 Water bridges: A:R.86 Salt bridges: A:R.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, W. et al., Molecular basis of the acetyltransferase activity of MEC-17 towards alpha- tubulin. Cell Res. (2012)

Release Date

2012-12-12

Peptides

Alpha-tubulin N-acetyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-tubulin N-acetyltransferase