SMTL ID : 4hlr.1

Structural Determinants of Trimerization Specificity in HIV-1 gp41 Protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-trimer

Ligands

3 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.1: 6 residues within 4Å: Chain A: L.28, K.29, L.33 Chain C: A.23, V.24, Y.27 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:V.24, C:Y.27, A:L.28 Hydrogen bonds: A:L.33 HEZ.2: 6 residues within 4Å: Chain A: A.23, V.24, Y.27 Chain B: L.28, K.29, L.33 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.24, A:Y.27, B:L.28 Hydrogen bonds: B:L.33 HEZ.3: 6 residues within 4Å: Chain B: A.23, V.24, Y.27 Chain C: L.28, K.29, L.33 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:L.28, B:V.24, B:Y.27 Hydrogen bonds: C:L.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Structural Determinants of Trimerization Specificity in HIV-1 gp41 Protein. To be Published

Release Date

2013-10-30

Peptides

Gp41: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Gp41