SMTL ID : 4hls.2 (2 other biounits)

Crystal structure of mutant rabbit PRP 121-230 (S170N)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: R.38 Ligand excluded by PLIP

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: E.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.55 NA.3: 6 residues within 4Å: Chain A: G.33, S.34, M.36, Q.62, V.63, Q.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.63, A:Q.119 NA.4: 2 residues within 4Å: Chain A: R.130, A.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.130 NA.5: 2 residues within 4Å: Chain A: A.132 Ligands: GOL.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.132, A:A.132

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: Y.30, R.66, H.79, D.80, N.83, I.84 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.30, A:R.66, A:H.79, A:D.80, A:N.83 GOL.7: 5 residues within 4Å: Chain A: L.40, I.41, D.49, Y.52, R.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.49, A:R.53 GOL.8: 4 residues within 4Å: Chain A: Y.128, A.131, A.132 Ligands: NA.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.128, A:Y.128 Water bridges: A:A.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sweeting, B. et al., N-Terminal Helix-Cap in alpha-Helix 2 Modulates beta-State Misfolding in Rabbit and Hamster Prion Proteins. Plos One (2013)

Release Date

2013-05-15

Peptides

Major prion protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Major prion protein

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