SMTL ID : 4hlw.1

Targeting the Binding Function 3 (BF3) Site of the Human Androgen Receptor Through Virtual Screening. 2. Development of 2-((2-phenoxyethyl) thio)-1H-benzoimidazole derivatives.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x TES: TESTOSTERONE(Non-covalent)

TES.1: 14 residues within 4Å: Chain A: L.38, L.41, N.42, G.45, Q.48, W.78, M.79, M.82, V.83, M.86, R.89, F.101, T.214, M.232 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.38, A:L.41, A:W.78, A:V.83, A:F.101 Hydrogen bonds: A:N.42, A:Q.48, A:R.89, A:T.214 Water bridges: A:R.89

1 x 17W: 2-[(2-phenoxyethyl)sulfanyl]-1H-benzimidazole(Non-covalent)

17W.2: 8 residues within 4Å: Chain A: F.10, P.60, G.61, N.64, L.167, N.170, E.174, R.177 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.10, A:L.167 Hydrogen bonds: A:E.174

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: P.19, Q.48, V.52, W.55, A.85, K.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.48, A:K.145 Water bridges: A:Q.48

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: S.33, F.34, K.114, R.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.34 Salt bridges: A:K.114, A:R.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munuganti, R.S. et al., Targeting the Binding Function 3 (BF3) Site of the Androgen Receptor Through Virtual Screening. 2. Development of 2-((2-phenoxyethyl) thio)-1H-benzimidazole Derivatives. J.Med.Chem. (2013)

Release Date

2013-01-23

Peptides

Androgen receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Androgen receptor

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