SMTL ID : 4hne.1

Crystal structure of the catalytic domain of human type II alpha Phosphatidylinositol 4-kinase (PI4KIIalpha) in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-16-mer

Ligands

16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: G.64, S.65, S.68, F.70, V.81, K.83, P.140, Q.192, L.193, F.194, V.195, I.276, D.277 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.65, A:S.65, A:S.68, A:Q.192, A:V.195 Water bridges: A:K.83, A:K.83, A:D.200 Salt bridges: A:K.83, A:K.83 ADP.2: 11 residues within 4Å: Chain B: Y.62, S.68, V.81, K.83, Q.192, L.193, F.194, V.195, L.246, I.276, D.277 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.62, B:S.68, B:Q.192, B:V.195 Salt bridges: B:K.83 ADP.3: 13 residues within 4Å: Chain C: G.64, S.65, S.68, F.70, V.81, K.83, P.140, Q.192, L.193, F.194, V.195, I.276, D.277 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:S.65, C:S.65, C:S.68, C:Q.192, C:V.195 Water bridges: C:K.83, C:K.83, C:D.200 Salt bridges: C:K.83, C:K.83 ADP.4: 11 residues within 4Å: Chain D: Y.62, S.68, V.81, K.83, Q.192, L.193, F.194, V.195, L.246, I.276, D.277 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Y.62, D:S.68, D:Q.192, D:V.195 Salt bridges: D:K.83 ADP.5: 13 residues within 4Å: Chain E: G.64, S.65, S.68, F.70, V.81, K.83, P.140, Q.192, L.193, F.194, V.195, I.276, D.277 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:S.65, E:S.65, E:S.68, E:Q.192, E:V.195 Water bridges: E:K.83, E:K.83, E:D.200 Salt bridges: E:K.83, E:K.83 ADP.6: 11 residues within 4Å: Chain F: Y.62, S.68, V.81, K.83, Q.192, L.193, F.194, V.195, L.246, I.276, D.277 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:Y.62, F:S.68, F:Q.192, F:V.195 Salt bridges: F:K.83 ADP.7: 13 residues within 4Å: Chain G: G.64, S.65, S.68, F.70, V.81, K.83, P.140, Q.192, L.193, F.194, V.195, I.276, D.277 10 PLIP interactions: 10 interactions with chain G Hydrogen bonds: G:S.65, G:S.65, G:S.68, G:Q.192, G:V.195 Water bridges: G:K.83, G:K.83, G:D.200 Salt bridges: G:K.83, G:K.83 ADP.8: 11 residues within 4Å: Chain H: Y.62, S.68, V.81, K.83, Q.192, L.193, F.194, V.195, L.246, I.276, D.277 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:Y.62, H:S.68, H:Q.192, H:V.195 Salt bridges: H:K.83 ADP.9: 13 residues within 4Å: Chain I: G.64, S.65, S.68, F.70, V.81, K.83, P.140, Q.192, L.193, F.194, V.195, I.276, D.277 9 PLIP interactions: 9 interactions with chain I Hydrogen bonds: I:S.65, I:S.65, I:S.68, I:Q.192, I:V.195 Water bridges: I:K.83, I:K.83 Salt bridges: I:K.83, I:K.83 ADP.10: 11 residues within 4Å: Chain J: Y.62, S.68, V.81, K.83, Q.192, L.193, F.194, V.195, L.246, I.276, D.277 4 PLIP interactions: 4 interactions with chain J Hydrogen bonds: J:S.68, J:Q.192, J:V.195 Salt bridges: J:K.83 ADP.11: 13 residues within 4Å: Chain K: G.64, S.65, S.68, F.70, V.81, K.83, P.140, Q.192, L.193, F.194, V.195, I.276, D.277 9 PLIP interactions: 9 interactions with chain K Hydrogen bonds: K:S.65, K:S.65, K:S.68, K:Q.192, K:V.195 Water bridges: K:K.83, K:K.83 Salt bridges: K:K.83, K:K.83 ADP.12: 11 residues within 4Å: Chain L: Y.62, S.68, V.81, K.83, Q.192, L.193, F.194, V.195, L.246, I.276, D.277 4 PLIP interactions: 4 interactions with chain L Hydrogen bonds: L:S.68, L:Q.192, L:V.195 Salt bridges: L:K.83 ADP.13: 13 residues within 4Å: Chain M: G.64, S.65, S.68, F.70, V.81, K.83, P.140, Q.192, L.193, F.194, V.195, I.276, D.277 9 PLIP interactions: 9 interactions with chain M Hydrogen bonds: M:S.65, M:S.65, M:S.68, M:Q.192, M:V.195 Water bridges: M:K.83, M:K.83 Salt bridges: M:K.83, M:K.83 ADP.14: 11 residues within 4Å: Chain N: Y.62, S.68, V.81, K.83, Q.192, L.193, F.194, V.195, L.246, I.276, D.277 4 PLIP interactions: 4 interactions with chain N Hydrogen bonds: N:S.68, N:Q.192, N:V.195 Salt bridges: N:K.83 ADP.15: 13 residues within 4Å: Chain O: G.64, S.65, S.68, F.70, V.81, K.83, P.140, Q.192, L.193, F.194, V.195, I.276, D.277 9 PLIP interactions: 9 interactions with chain O Hydrogen bonds: O:S.65, O:S.65, O:S.68, O:Q.192, O:V.195 Water bridges: O:K.83, O:K.83 Salt bridges: O:K.83, O:K.83 ADP.16: 11 residues within 4Å: Chain P: Y.62, S.68, V.81, K.83, Q.192, L.193, F.194, V.195, L.246, I.276, D.277 4 PLIP interactions: 4 interactions with chain P Hydrogen bonds: P:S.68, P:Q.192, P:V.195 Salt bridges: P:K.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Q. et al., Molecular insights into the membrane-associated phosphatidylinositol 4-kinase II alpha. Nat Commun (2014)

Release Date

2014-04-09

Peptides

Phosphatidylinositol 4-kinase type 2-alpha: ABCDEFGHIJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

I
A

J
B

K
A

L
B

M
A

N
B

O
A

P
B

Phosphatidylinositol 4-kinase type 2-alpha

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