SMTL ID : 4hpk.1

Crystal structure of Clostridium histolyticum colg collagenase collagen-binding domain 3B at 1.35 Angstrom resolution in presence of calcium nitrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: E.6, N.8, D.9, D.32, R.34, D.35 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.6, A:D.9, A:D.32, A:R.34, A:D.35 CA.2: 6 residues within 4Å: Chain A: E.4, E.6, S.27, D.32, D.35 Ligands: CA.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.4, A:E.6, A:S.27, A:D.32, H2O.1 CA.5: 7 residues within 4Å: Chain B: E.11, N.13, D.14, D.37, R.39, D.40 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:D.14, B:D.37, B:R.39, B:D.40 CA.6: 6 residues within 4Å: Chain B: E.9, E.11, S.32, D.37, D.40 Ligands: CA.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.9, B:S.32, B:D.37, B:D.40, H2O.6

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: F.20, K.42, E.43, K.113 Ligand excluded by PLIP

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 8 residues within 4Å: Chain A: L.63, P.65, R.72, I.73, T.74, V.87, L.89, Y.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.63, A:R.72, A:T.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bauer, R. et al., Structural Comparison of ColH and ColG Collagen-Binding Domains from Clostridium histolyticum. J.Bacteriol. (2013)

Release Date

2012-12-12

Peptides

Collagenase: A
Collagenase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Collagenase

Collagenase