SMTL ID : 4hqu.1

Crystal structure of human PDGF-BB in complex with a modified nucleotide aptamer (SOMAmer SL5)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain B: C.10, C.14, G.15, A.21, G.22 No protein-ligand interaction detected (PLIP) NA.3: 5 residues within 4Å: Chain D: C.10, C.14, G.15, A.21, G.22 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, D.R. et al., Unique motifs and hydrophobic interactions shape the binding of modified DNA ligands to protein targets. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-11-21

Peptides

Platelet-derived growth factor subunit B: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

Platelet-derived growth factor subunit B

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