SMTL ID : 4hqx.1

CRYSTAL STRUCTURE OF HUMAN PDGF-BB IN COMPLEX WITH A Modified nucleotide aptamer (SOMAmer SL4)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain B: C.10, C.14, G.15, G.22 No protein-ligand interaction detected (PLIP) NA.3: 4 residues within 4Å: Chain D: C.10, C.14, G.15, G.22 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Chain B: X.24 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain D: X.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, D.R. et al., Unique motifs and hydrophobic interactions shape the binding of modified DNA ligands to protein targets. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-11-21

Peptides

Platelet-derived growth factor subunit B: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

Platelet-derived growth factor subunit B