SMTL ID : 4hse.1

Crystal structure of ClpB NBD1 in complex with guanidinium chloride and ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GAI: GUANIDINE(Non-covalent)

GAI.1: 6 residues within 4Å: Chain A: D.33, P.34, V.35, A.69, E.72 Ligands: ADP.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.33 Water bridges: A:D.33, A:D.33 Salt bridges: A:D.33, A:E.72

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 18 residues within 4Å: Chain A: P.34, V.35, I.36, R.38, E.62, P.63, G.64, V.65, G.66, K.67, T.68, A.69, I.203, L.207, P.241, D.242, I.245 Ligands: GAI.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:I.36, A:I.36, A:G.64, A:V.65, A:G.66, A:K.67, A:T.68, A:T.68, A:A.69 Water bridges: A:K.67, A:K.67, A:D.242 Salt bridges: A:K.67

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: D.39, R.43, R.77 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeymer, C. et al., The molecular mechanism of hsp100 chaperone inhibition by the prion curing agent guanidinium chloride. J.Biol.Chem. (2013)

Release Date

2013-01-30

Peptides

Chaperone protein ClpB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chaperone protein ClpB