SMTL ID : 4hsn.1

Crystal structure of DAH7PS from Neisseria meningitidis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: C.63, H.270, E.304, D.324 Ligands: PEP.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.63, A:H.270, A:E.304, A:D.324, H2O.5 MN.4: 5 residues within 4Å: Chain B: C.63, H.270, E.304, D.324 Ligands: PEP.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.63, B:H.270, B:E.304, B:D.324, H2O.11 MN.7: 5 residues within 4Å: Chain C: C.63, H.270, E.304, D.324 Ligands: PEP.9 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.63, C:H.270, C:E.304, C:D.324, H2O.16 MN.10: 5 residues within 4Å: Chain D: C.63, H.270, E.304, D.324 Ligands: PEP.12 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.63, D:H.270, D:E.304, D:D.324, H2O.20

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: P.100, R.101, T.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.102, A:T.102 Water bridges: A:T.103 Salt bridges: A:R.101 SO4.5: 2 residues within 4Å: Chain B: R.101, T.102 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.102, B:T.102 Water bridges: B:T.103 Salt bridges: B:R.101 SO4.8: 3 residues within 4Å: Chain C: P.100, R.101, T.102 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.102 Water bridges: C:T.103, C:V.104 Salt bridges: C:R.101 SO4.11: 3 residues within 4Å: Chain D: P.100, R.101, T.102 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.102, D:T.102 Salt bridges: D:R.101

4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)

PEP.3: 13 residues within 4Å: Chain A: R.94, Y.96, K.99, E.145, G.165, A.166, R.167, K.188, R.236, H.270, M.302, E.304 Ligands: MN.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:A.166 Water bridges: A:R.94, A:E.145, A:R.167 Salt bridges: A:R.94, A:K.99, A:R.167, A:K.188, A:K.188, A:R.236, A:H.270, A:H.270 PEP.6: 13 residues within 4Å: Chain B: R.94, Y.96, K.99, E.145, G.165, A.166, R.167, K.188, R.236, H.270, M.302, E.304 Ligands: MN.4 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Y.96, B:A.166 Water bridges: B:R.167 Salt bridges: B:R.94, B:K.99, B:R.167, B:K.188, B:K.188, B:R.236, B:H.270, B:H.270 PEP.9: 12 residues within 4Å: Chain C: R.94, Y.96, K.99, E.145, G.165, A.166, R.167, K.188, R.236, H.270, E.304 Ligands: MN.7 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:A.166 Water bridges: C:R.167, C:K.188 Salt bridges: C:R.94, C:K.99, C:R.167, C:K.188, C:K.188, C:R.236, C:H.270, C:H.270 PEP.12: 12 residues within 4Å: Chain D: R.94, Y.96, K.99, E.145, G.165, A.166, R.167, K.188, R.236, H.270, E.304 Ligands: MN.10 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:A.166 Water bridges: D:K.99, D:R.167, D:K.188 Salt bridges: D:R.94, D:K.99, D:R.167, D:K.188, D:K.188, D:R.236, D:H.270, D:H.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cross, P.J. et al., Neisseria meningitidis expresses a single 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase that is inhibited primarily by phenylalanine. Protein Sci. (2013)

Release Date

2013-09-11

Peptides

3-deoxy-D-arabino-heptulosonate 7-phosphate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-deoxy-D-arabino-heptulosonate 7-phosphate synthase

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