SMTL ID : 4htz.1 (1 other biounit)

Crystal structure of PDE2 catalytic domain in space group P1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.83, H.119, D.120, D.231 Ligands: MG.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.83, A:H.119, A:D.120, A:D.231, H2O.3, H2O.9 ZN.3: 5 residues within 4Å: Chain B: H.83, H.119, D.120, D.231 Ligands: MG.4 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.83, B:H.119, B:D.120, B:D.231, H2O.16, H2O.17

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.120 Ligands: ZN.1 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.120, H2O.3, H2O.3, H2O.4, H2O.4, H2O.9 MG.4: 2 residues within 4Å: Chain B: D.120 Ligands: ZN.3 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:D.120, H2O.12, H2O.13, H2O.14, H2O.15, H2O.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., X-ray Crystal Structure of Phosphodiesterase 2 in Complex with a Highly Selective, Nanomolar Inhibitor Reveals a Binding-Induced Pocket Important for Selectivity. J.Am.Chem.Soc. (2013)

Release Date

2013-08-28

Peptides

cGMP-dependent 3',5'-cyclic phosphodiesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

cGMP-dependent 3',5'-cyclic phosphodiesterase

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