SMTL ID : 4huc.1 (1 other biounit)

Crystal structure of LdtMt2, a L,D-transpeptidase from Mycobacterium tuberculosis: domain B and C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: V.164, N.170 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.170 ACT.2: 4 residues within 4Å: Chain A: N.58, Y.184, I.242, D.243 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.184 Hydrogen bonds: A:N.58 ACT.3: 4 residues within 4Å: Chain A: M.157, Y.172, T.174, H.206 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.172, A:T.174 Hydrogen bonds: A:T.174, A:H.206 Water bridges: A:H.206 Salt bridges: A:H.206 ACT.4: 3 residues within 4Å: Chain A: K.153, D.177, W.178 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.154, A:D.177 ACT.5: 1 residues within 4Å: Chain A: R.173 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.173 ACT.6: 5 residues within 4Å: Chain A: E.67, H.68, F.69, W.248 Ligands: ACT.8 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.69 Hydrogen bonds: A:F.69 Salt bridges: A:H.68 ACT.7: 5 residues within 4Å: Chain A: T.238, L.239, P.240, G.241, N.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.241 Water bridges: A:I.242 ACT.8: 4 residues within 4Å: Chain A: F.69, I.145, E.230 Ligands: ACT.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.145 Hydrogen bonds: A:E.230 Water bridges: A:E.230, A:E.230

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 4 residues within 4Å: Chain A: V.196, G.197, Q.199, H.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Both, D. et al., Structure of LdtMt2, an L,D-transpeptidase from Mycobacterium tuberculosis. Acta Crystallogr.,Sect.D (2013)

Release Date

2012-12-12

Peptides

PROBABLE CONSERVED LIPOPROTEIN LPPS: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROBABLE CONSERVED LIPOPROTEIN LPPS

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