SMTL ID : 4huf.1 (1 other biounit)

Structure of 5-chlorouracil modified A:U base pair

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: G.16, N.17, P.18 Chain B: C.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.17, A:P.18 GOL.3: 6 residues within 4Å: Chain A: T.75 Chain B: G.2, C.3 Chain C: G.10, C.11, G.12 5 PLIP interactions: 5 interactions with chain A Water bridges: A:N.46, A:N.46, A:T.75, A:T.75, A:T.75

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.11, N.45, E.49, N.72 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.11, A:E.49, H2O.2, H2O.2, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patra, A. et al., Structure, stability and function of 5-chlorouracil modified A:U and G:U base pairs. Nucleic Acids Res. (2013)

Release Date

2012-12-19

Peptides

Ribonuclease H: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease H

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