SMTL ID : 4hvj.1

Crystal structure of a putative uncharacterized protein from Mycobacterium tuberculosis in complex with AMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 10 residues within 4Å: Chain A: D.28, T.29, E.30, F.31, W.68, V.69, H.162 Chain B: M.128, T.129 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.28, A:E.30, A:F.31, A:F.31 Water bridges: A:T.29 Salt bridges: A:H.162 pi-Stacking: A:W.68, A:W.68, A:W.68

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.28, D.117 Ligands: AMP.1 6 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.28, H2O.1, H2O.1, H2O.1, H2O.3, AMP.1 MG.3: 3 residues within 4Å: Chain B: D.28, T.29, D.117 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.28, B:T.29, B:D.117, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Mycobacterium tuberculosis Rv2179c Protein Establishes a New Exoribonuclease Family with Broad Phylogenetic Distribution. J.Biol.Chem. (2014)

Release Date

2012-11-28

Peptides

Putative uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative uncharacterized protein

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