SMTL ID : 4hwl.1 (2 other biounits)

Crystal Structure Analysis of the Bacteriorhodopsin in Facial Amphiphile-7 DMPC Bicelle

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x RET: RETINAL(Covalent)

RET.1: 17 residues within 4Å: Chain A: Y.96, W.99, T.103, L.106, M.131, G.135, W.151, S.154, T.155, M.158, W.195, Y.198, P.199, W.202, D.225, A.228, K.229 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.96, A:W.99, A:T.103, A:L.106, A:M.158, A:W.195, A:Y.198, A:Y.198, A:Y.198, A:P.199, A:A.228, A:K.229

2 x HEX: HEXANE(Non-covalent)

HEX.2: 2 residues within 4Å: Chain A: G.119, L.122 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.122 HEX.6: 1 residues within 4Å: Chain A: V.212 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.212

3 x HP6: HEPTANE(Non-covalent)

HP6.3: 5 residues within 4Å: Chain A: W.151, T.155, M.158, S.196, P.199 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.151, A:T.155, A:P.199 HP6.4: 2 residues within 4Å: Chain A: N.189, V.190 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.189 HP6.5: 3 residues within 4Å: Chain A: L.159, L.162, F.166 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.159, A:L.162, A:F.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S.C. et al., Steroid-based facial amphiphiles for stabilization and crystallization of membrane proteins. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-03-20

Peptides

Bacteriorhodopsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin

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