- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- monomer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 5 residues within 4Å:- Chain A: T.32, M.98, I.101, L.145
- Ligands: MPD.5
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.101
MPD.5: 10 residues within 4Å:- Chain A: T.32, Q.52, I.101, K.103, L.133, Y.137, E.138, A.141, Y.142
- Ligands: MPD.4
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.133, A:Y.142
- Hydrogen bonds: A:T.32, A:T.32
- Water bridges: A:Q.52
MPD.6: 2 residues within 4Å:- Chain A: Q.140, R.147
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.140
MPD.7: 4 residues within 4Å:- Chain A: L.12, R.16, H.126, M.128
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.16
MPD.8: 3 residues within 4Å:- Chain A: F.75, R.102, W.110
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.75, A:F.75
- Hydrogen bonds: A:R.102, A:W.110
- 12 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)
BU1.9: 4 residues within 4Å:- Chain A: K.17, R.21, F.68, D.91
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:K.17, A:F.68
- Hydrogen bonds: A:K.17, A:R.21
- Water bridges: A:K.17, A:R.21
BU1.10: 3 residues within 4Å:- Chain A: S.77, T.78, E.79
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:E.79
- Hydrogen bonds: A:S.77, A:E.79
- Water bridges: A:E.79
BU1.11: 5 residues within 4Å:- Chain A: S.34, H.47, D.48, D.50, Y.142
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.34, A:H.47, A:D.48, A:Y.142
BU1.12: 3 residues within 4Å:- Chain A: L.105, E.111, D.112
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:E.111
BU1.13: 2 residues within 4Å:- Chain A: E.106, D.107
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:D.107
- Hydrogen bonds: A:E.106, A:E.106
- Water bridges: A:D.107
BU1.14: 6 residues within 4Å:- Chain A: K.80, R.147, V.148, A.151, E.152, R.155
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:K.80, A:V.148, A:A.151
- Hydrogen bonds: A:R.147, A:E.152, A:R.155, A:R.155
- Water bridges: A:R.147
BU1.15: 8 residues within 4Å:- Chain A: Y.19, L.22, K.23, E.25, V.27, W.29, F.122, K.129
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.29
- Hydrogen bonds: A:E.25, A:V.27, A:K.129
- Water bridges: A:Y.19
BU1.16: 1 residues within 4Å:- Chain A: E.106
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.106
BU1.17: 5 residues within 4Å:- Chain A: R.147, K.150, A.151, L.154, R.155
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:K.150, A:A.151, A:L.154
- Hydrogen bonds: A:K.150, A:A.151
BU1.18: 4 residues within 4Å:- Chain A: Y.59, V.73, R.74, F.75
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.59, A:F.75
- Hydrogen bonds: A:R.74, A:F.75
- Water bridges: A:K.72, A:K.72
BU1.19: 4 residues within 4Å:- Chain A: V.42, L.135, E.136, Y.139
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.136, A:Y.139
BU1.20: 7 residues within 4Å:- Chain A: H.5, M.6, I.7, R.8, Y.11, E.45, V.46
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:R.8, A:E.45
- Hydrogen bonds: A:R.8, A:R.8, A:E.45, A:V.46, A:V.46
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Boyko, K.M. et al., Crystal structure of putative nucleotidyltransferase with two MPD molecules in the active site. To be Published
- Release Date
- 2013-09-11
- Peptides
- Putative nucleotidyltransferase TM1012: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- monomer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 12 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Boyko, K.M. et al., Crystal structure of putative nucleotidyltransferase with two MPD molecules in the active site. To be Published
- Release Date
- 2013-09-11
- Peptides
- Putative nucleotidyltransferase TM1012: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A