SMTL ID : 4hz5.12 (11 other biounits)

Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-trimer

Ligands

2 x 19Y: 6-ethyl-4-methoxy-2-(pyridin-3-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbaldehyde(Non-covalent)

19Y.1: 14 residues within 4Å: Chain A: I.29, N.32, E.36, V.57, D.59, R.62, G.63, M.64, P.65, I.79, H.101, G.102, T.152, V.154 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.29, A:N.32, A:V.154 Hydrogen bonds: A:N.32, A:D.59 pi-Cation interactions: A:R.62 19Y.2: 14 residues within 4Å: Chain B: I.29, N.32, E.36, V.57, D.59, R.62, G.63, M.64, P.65, I.79, H.101, A.105, T.152, V.154 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.29, B:N.32, B:V.154 Hydrogen bonds: B:D.59, B:T.152 Water bridges: B:R.62 pi-Cation interactions: B:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tari, L.W. et al., Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-02-13

Peptides

DNA topoisomerase IV, B subunit: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
H

DNA topoisomerase IV, B subunit

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