SMTL ID : 4hzv.1

The crystal structure of influenza A neuraminidase N3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

8 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 3 residues within 4Å: Chain A: N.65, S.356, K.388 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.2: 4 residues within 4Å: Chain A: D.154, N.226, N.227, E.228 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.206 NAG-NAG-FUC.9: 3 residues within 4Å: Chain B: N.65, S.356, K.388 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.10: 4 residues within 4Å: Chain B: D.154, N.226, N.227, E.228 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.206 NAG-NAG-FUC.17: 3 residues within 4Å: Chain C: N.65, S.356, K.388 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.18: 4 residues within 4Å: Chain C: D.154, N.226, N.227, E.228 1 PLIP interactions: 1 interactions with chain C Water bridges: C:D.206 NAG-NAG-FUC.25: 3 residues within 4Å: Chain D: N.65, S.356, K.388 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.26: 4 residues within 4Å: Chain D: D.154, N.226, N.227, E.228 1 PLIP interactions: 1 interactions with chain D Water bridges: D:D.206

8 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.213, G.217, D.243, G.263, P.265, G.266 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.213, A:G.217, A:D.243, A:G.263, A:P.265, H2O.2 CA.4: 7 residues within 4Å: Chain A: D.32 Chain B: D.32 Chain C: D.32 Chain D: D.32 Ligands: CA.12, CA.20, CA.28 No protein-ligand interaction detected (PLIP) CA.11: 6 residues within 4Å: Chain B: D.213, G.217, D.243, G.263, P.265, G.266 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.213, B:G.217, B:D.243, B:G.263, B:P.265, H2O.15 CA.12: 7 residues within 4Å: Chain A: D.32 Chain B: D.32 Chain C: D.32 Chain D: D.32 Ligands: CA.4, CA.20, CA.28 No protein-ligand interaction detected (PLIP) CA.19: 6 residues within 4Å: Chain C: D.213, G.217, D.243, G.263, P.265, G.266 6 PLIP interactions: 5 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.213, C:G.217, C:D.243, C:G.263, C:P.265, H2O.27 CA.20: 7 residues within 4Å: Chain A: D.32 Chain B: D.32 Chain C: D.32 Chain D: D.32 Ligands: CA.4, CA.12, CA.28 No protein-ligand interaction detected (PLIP) CA.27: 6 residues within 4Å: Chain D: D.213, G.217, D.243, G.263, P.265, G.266 6 PLIP interactions: 5 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.213, D:G.217, D:D.243, D:G.263, D:P.265, H2O.40 CA.28: 7 residues within 4Å: Chain A: D.32 Chain B: D.32 Chain C: D.32 Chain D: D.32 Ligands: CA.4, CA.12, CA.20 No protein-ligand interaction detected (PLIP)

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: D.70, R.71, R.75, W.98, R.144, E.147 Ligand excluded by PLIP GOL.6: 10 residues within 4Å: Chain A: C.43, D.44, N.45, D.46, N.47, C.48 Chain D: G.128, G.129, R.130 Ligands: GOL.7 Ligand excluded by PLIP GOL.7: 7 residues within 4Å: Chain A: K.5, C.43, D.44, I.329, V.330, K.331 Ligands: GOL.6 Ligand excluded by PLIP GOL.8: 6 residues within 4Å: Chain A: I.94, W.109, H.111, I.126, G.129 Chain C: H.20 Ligand excluded by PLIP GOL.13: 6 residues within 4Å: Chain B: D.70, R.71, R.75, W.98, R.144, E.147 Ligand excluded by PLIP GOL.14: 10 residues within 4Å: Chain B: C.43, D.44, N.45, D.46, N.47, C.48 Chain C: G.128, G.129, R.130 Ligands: GOL.15 Ligand excluded by PLIP GOL.15: 7 residues within 4Å: Chain B: K.5, C.43, D.44, I.329, V.330, K.331 Ligands: GOL.14 Ligand excluded by PLIP GOL.16: 6 residues within 4Å: Chain B: I.94, W.109, H.111, I.126, G.129 Chain D: H.20 Ligand excluded by PLIP GOL.21: 6 residues within 4Å: Chain C: D.70, R.71, R.75, W.98, R.144, E.147 Ligand excluded by PLIP GOL.22: 10 residues within 4Å: Chain A: G.128, G.129, R.130 Chain C: C.43, D.44, N.45, D.46, N.47, C.48 Ligands: GOL.23 Ligand excluded by PLIP GOL.23: 7 residues within 4Å: Chain C: K.5, C.43, D.44, I.329, V.330, K.331 Ligands: GOL.22 Ligand excluded by PLIP GOL.24: 6 residues within 4Å: Chain B: H.20 Chain C: I.94, W.109, H.111, I.126, G.129 Ligand excluded by PLIP GOL.29: 6 residues within 4Å: Chain D: D.70, R.71, R.75, W.98, R.144, E.147 Ligand excluded by PLIP GOL.30: 10 residues within 4Å: Chain B: G.128, G.129, R.130 Chain D: C.43, D.44, N.45, D.46, N.47, C.48 Ligands: GOL.31 Ligand excluded by PLIP GOL.31: 7 residues within 4Å: Chain D: K.5, C.43, D.44, I.329, V.330, K.331 Ligands: GOL.30 Ligand excluded by PLIP GOL.32: 6 residues within 4Å: Chain A: H.20 Chain D: I.94, W.109, H.111, I.126, G.129 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Q. et al., Functional and structural analysis of influenza virus neuraminidase N3 offers further insight into the mechanisms of oseltamivir resistance. J.Virol. (2013)

Release Date

2013-11-06

Peptides

Neuraminidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Neuraminidase

Related Entries With Identical Sequence