SMTL ID : 4i1p.2 (2 other biounits)

Human MALT1 (caspase-IG3) in complex with activity based-probe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ALA- LEU- ARG- SER- 4AR: tetrapeptide(Non-covalent)

ALA-LEU-ARG-SER-4AR.1: 20 residues within 4Å: Chain A: K.21, L.22, K.23, A.24, P.25, D.28, A.76, G.77, H.78, G.79, D.125, C.127, E.160, A.161, F.162, E.163, I.164, Q.165, L.204, T.205 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.22, A:F.162, A:F.162, A:E.163, A:L.204, A:T.205 Hydrogen bonds: A:A.24, A:H.78, A:G.79, A:D.125, A:C.127, A:E.160, A:A.161, A:E.163, A:E.163, A:Q.165 Salt bridges: A:D.28, A:D.125, A:E.163

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: R.55, V.58, L.103 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.55 ACT.3: 2 residues within 4Å: Chain A: H.78, Y.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.97, A:Y.97 Salt bridges: A:H.19, A:H.78 ACT.4: 5 residues within 4Å: Chain A: E.53, N.56, A.57, Q.339, D.379 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.339 Hydrogen bonds: A:D.379 ACT.5: 2 residues within 4Å: Chain A: M.1, D.185 No protein-ligand interaction detected (PLIP) ACT.6: 4 residues within 4Å: Chain A: E.60, L.63, Q.242, L.378 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.242, A:L.378

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eitelhuber, A.C. et al., Activity-Based Probes for Detection of Active MALT1 Paracaspase in Immune Cells and Lymphomas. Chem.Biol. (2015)

Release Date

2014-07-09

Peptides

Mucosa-associated lymphoid tissue lymphoma translocation protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Mucosa-associated lymphoid tissue lymphoma translocation protein 1

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