SMTL ID : 4i35.1

The crystal structure of serralysin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: D.166, H.227, Y.228, A.229, A.230, K.276, I.278 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.228, A:A.230, A:K.276 Water bridges: A:H.227, A:H.227, A:A.231, A:K.276, A:I.278, A:I.278 GOL.2: 5 residues within 4Å: Chain A: T.2, Y.4, D.5, S.403, K.407 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.2, A:S.403, A:S.403 Water bridges: A:D.5, A:D.5 GOL.3: 5 residues within 4Å: Chain A: W.44, N.45, V.54, K.55, N.112 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.55, A:N.112 Water bridges: A:W.44, A:K.55 GOL.4: 5 residues within 4Å: Chain A: Y.13, H.14, R.16, K.306, S.307 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.14 Water bridges: A:L.11, A:R.16, A:N.302 GOL.5: 5 residues within 4Å: Chain A: N.99, A.246, N.247, L.248, S.249 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.99, A:A.246, A:L.248

2 x HEX: HEXANE(Non-covalent)

HEX.6: 4 residues within 4Å: Chain A: H.184, P.195, Y.214, W.215 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.195, A:Y.214, A:W.215 HEX.7: 4 residues within 4Å: Chain A: Y.133, A.134, F.135 Ligands: OCT.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.133, A:Y.133, A:Y.133, A:F.135

2 x OCT: N-OCTANE(Non-covalent)

OCT.8: 6 residues within 4Å: Chain A: V.70, F.135, T.139, W.141, L.146 Ligands: HEX.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.135, A:T.139, A:W.141, A:W.141, A:W.141, A:L.146 OCT.9: 4 residues within 4Å: Chain A: F.28, Q.32, L.35, F.36 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.28, A:L.35, A:F.36

1 x ZN: ZINC ION(Non-covalent)

ZN.10: 5 residues within 4Å: Chain A: H.174, E.175, H.178, H.184, Y.214 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.174, A:H.178, A:H.184, A:Y.214, H2O.17

7 x CA: CALCIUM ION(Non-covalent)

CA.11: 6 residues within 4Å: Chain A: R.251, G.253, T.255, D.283, G.285, D.288 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.251, A:G.253, A:T.255, A:G.285, A:D.288 CA.12: 4 residues within 4Å: Chain A: G.286, D.288, T.325, E.327 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.286, A:D.288, A:T.325, A:E.327, H2O.18 CA.13: 7 residues within 4Å: Chain A: G.332, G.334, D.336, G.349, G.350, A.351, D.354 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:G.332, A:G.334, A:D.336, A:G.349, A:A.351, A:D.354 CA.14: 7 residues within 4Å: Chain A: N.341, A.343, N.345, G.358, G.359, G.360, D.363 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.341, A:A.343, A:G.358, A:G.360, A:D.363 CA.15: 8 residues within 4Å: Chain A: G.350, A.351, G.352, D.354, G.367, G.368, A.369, D.372 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.350, A:G.352, A:D.354, A:G.367, A:D.372 CA.16: 5 residues within 4Å: Chain A: G.368, A.369, G.370, D.372, D.398 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.368, A:D.372, A:D.398, H2O.19, H2O.21 CA.17: 6 residues within 4Å: Chain A: G.359, G.360, G.361, D.363, D.381, D.388 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.359, A:G.361, A:D.363, A:D.381, A:D.388, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., The crystal structure of serralysin. To be Published

Release Date

2013-11-27

Peptides

Serralysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serralysin