SMTL ID : 4i4k.1

Streptomyces globisporus C-1027 9-membered enediyne conserved protein SgcE6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 4 residues within 4Å: Chain A: R.57, T.65, H.66, A.69 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.69 Hydrogen bonds: A:R.57 Water bridges: A:R.57, A:H.66, A:H.66 Salt bridges: A:R.57, A:R.57, A:H.66 CIT.5: 4 residues within 4Å: Chain B: R.57, T.65, H.66, A.69 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:A.69 Hydrogen bonds: B:T.65 Water bridges: B:R.57, B:T.65, B:H.66, B:H.66 Salt bridges: B:R.57, B:R.57, B:H.66, B:H.66

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 16 residues within 4Å: Chain A: I.28, W.32, F.40, L.52, Y.75, V.80, I.81, G.82, T.99, G.101, G.102, V.117, A.119, W.121, Y.135, N.137 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.99, A:Y.135, A:N.137 Water bridges: A:G.82

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: P.84, I.85, D.86, A.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.85 Water bridges: A:A.87

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 3 residues within 4Å: Chain A: A.13, D.92, E.125 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.125, A:E.125

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.6: 18 residues within 4Å: Chain B: P.25, W.32, L.52, Y.75, V.80, I.81, G.82, S.83, T.99, E.100, G.101, G.102, I.103, V.117, A.119, W.121, Y.135, N.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.99, B:Y.135, B:N.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, T. et al., Crystal structure of SgcJ, an NTF2-like superfamily protein involved in biosynthesis of the nine-membered enediyne antitumor antibiotic C-1027. J Antibiot (Tokyo) (2016)

Release Date

2012-12-12

Peptides

uncharacterized protein SgcJ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

uncharacterized protein SgcJ