SMTL ID : 4i7o.2 (1 other biounit)

T4 Lysozyme L99A/M102H with 2-amino-5-chlorothiazole bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: A.96, R.99, R.103 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.103 Salt bridges: A:R.99, A:R.103 ACT.7: 3 residues within 4Å: Chain A: R.37, L.38, K.39 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.38, A:K.39 Salt bridges: A:R.37

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 5 residues within 4Å: Chain A: I.26, Y.111, R.119, C.120, I.123 No protein-ligand interaction detected (PLIP) BME.8: 4 residues within 4Å: Chain A: G.53, H.54, L.55, F.127 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.126, A:F.127

1 x 1DH: 5-chloro-1,3-thiazol-2-amine(Non-covalent)

1DH.3: 9 residues within 4Å: Chain A: L.107, Y.111, A.122, H.125, V.126, V.134, L.141, L.144, F.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.125 Halogen bonds: A:L.107

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.99, R.103 Ligands: ACT.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.99, A:R.103 SO4.5: 2 residues within 4Å: Chain A: R.142, R.148 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.142, A:R.148 SO4.6: 1 residues within 4Å: Chain A: K.158 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Merski, M. et al., The impact of introducing a histidine into an apolar cavity site on docking and ligand recognition. J.Med.Chem. (2013)

Release Date

2013-03-27

Peptides

Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Lysozyme

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