SMTL ID : 4i8d.2 (1 other biounit)

Crystal Structure of Beta-D-glucoside glucohydrolase from Trichoderma reesei

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.1: 11 residues within 4Å: Chain A: L.163, P.177, D.178, D.179, L.182, N.209, Y.218, T.682, A.683, S.684, Q.685 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.178 Hydrogen bonds: A:D.179 Water bridges: A:R.180

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 3 residues within 4Å: Chain A: N.311, S.313, R.314 No protein-ligand interaction detected (PLIP)

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.3: 13 residues within 4Å: Chain A: V.44, D.62, R.68, L.111, R.126, K.159, H.160, R.170, M.202, Y.205, D.237, S.385, E.442 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:D.62, A:R.68, A:R.126, A:R.126, A:K.159, A:H.160, A:R.170, A:R.170, A:Y.205, A:Y.205, A:S.385 Water bridges: A:K.159 Salt bridges: A:R.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karkehabadi, S. et al., Biochemical Characterization and Crystal Structures of a Fungal Family 3 beta-Glucosidase, Cel3A from Hypocrea jecorina. J.Biol.Chem. (2014)

Release Date

2012-12-19

Peptides

Beta-D-glucoside glucohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-D-glucoside glucohydrolase

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