Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
OpenStructure Actions API
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 4i8p.1
Crystal structure of aminoaldehyde dehydrogenase 1a from Zea mays (ZmAMADH1a)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.95 Å
Oligo State
homo-dimer
Ligands
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.1:
28 residues within 4Å:
Chain A:
I.175
,
T.176
,
P.177
,
W.178
,
N.179
,
M.184
,
K.202
,
P.203
,
S.204
,
E.205
,
G.235
,
G.239
,
A.240
,
F.253
,
T.254
,
G.255
,
S.256
,
T.259
,
K.262
,
I.263
,
E.277
,
L.278
,
G.279
,
C.311
,
E.410
,
F.412
,
L.438
,
W.476
19
PLIP interactions
:
19 interactions with chain A
Hydrophobic interactions:
A:P.177
,
A:T.254
Hydrogen bonds:
A:T.176
,
A:T.176
,
A:W.178
,
A:K.202
,
A:E.205
,
A:S.256
,
A:T.259
,
A:T.259
,
A:E.277
,
A:E.277
,
A:E.410
Water bridges:
A:G.235
,
A:G.235
,
A:S.243
,
A:S.256
,
A:F.257
,
A:E.410
NAD.5:
29 residues within 4Å:
Chain B:
I.175
,
T.176
,
P.177
,
W.178
,
N.179
,
M.184
,
W.187
,
K.202
,
P.203
,
S.204
,
E.205
,
G.235
,
G.239
,
A.240
,
F.253
,
T.254
,
G.255
,
S.256
,
T.259
,
K.262
,
I.263
,
E.277
,
L.278
,
G.279
,
C.311
,
E.410
,
F.412
,
L.438
,
W.476
20
PLIP interactions
:
20 interactions with chain B
Hydrophobic interactions:
B:P.177
,
B:T.254
Hydrogen bonds:
B:T.176
,
B:W.178
,
B:K.202
,
B:E.205
,
B:S.256
,
B:T.259
,
B:E.277
,
B:E.410
Water bridges:
B:W.178
,
B:S.243
,
B:F.257
,
B:T.259
,
B:T.259
,
B:K.262
,
B:K.262
,
B:S.266
,
B:E.410
,
B:E.410
2 x
NA
:
SODIUM ION
(Non-functional Binders)
NA.2:
3 residues within 4Å:
Chain A:
V.45
,
D.116
,
L.206
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:D.116
,
A:L.206
NA.6:
3 residues within 4Å:
Chain B:
V.45
,
D.116
,
L.206
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:V.45
1 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.3:
5 residues within 4Å:
Chain A:
L.42
,
P.43
,
E.205
,
L.206
,
L.234
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:P.43
Water bridges:
A:V.45
2 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.4:
7 residues within 4Å:
Chain A:
Y.180
,
W.187
,
W.305
,
C.311
,
S.312
,
C.470
,
W.476
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:S.312
Water bridges:
A:S.312
,
A:S.312
EDO.8:
7 residues within 4Å:
Chain B:
Y.180
,
W.187
,
W.305
,
C.311
,
S.312
,
C.470
,
W.476
2
PLIP interactions
:
2 interactions with chain B
Water bridges:
B:Y.180
,
B:S.312
1 x
PEG
:
DI(HYDROXYETHYL)ETHER
(Non-functional Binders)
PEG.7:
5 residues within 4Å:
Chain B:
K.370
,
I.376
,
G.379
,
G.380
,
V.381
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:G.379
Water bridges:
B:T.378
,
B:T.378
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Kopecny, D. et al., Plant ALDH10 family: identifying critical residues for substrate specificity and trapping a thiohemiacetal intermediate. J.Biol.Chem. (2013)
Release Date
2013-02-20
Peptides
Aminoaldehyde dehydrogenase 1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Aminoaldehyde dehydrogenase 1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme