SMTL ID : 4i9j.1

Structure of the N254Y/H258Y mutant of the phosphatidylinositol-specific phospholipase C from S. aureus bound to diC4PC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: K.113, R.166, W.185 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.113, A:K.113 Salt bridges: A:K.113, A:R.166

3 x XP5: (4S,7R)-7-(heptanoyloxy)-4-hydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphahexadecan-1-aminium 4-oxide

XP5.2: 6 residues within 4Å: Chain A: S.257, Y.258, E.262, K.265, W.287, Y.290 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.265, A:Y.290, A:Y.290 Hydrogen bonds: A:Y.258, A:E.262, A:Y.290 pi-Cation interactions: A:Y.258, A:W.287, A:Y.290 XP5.3: 6 residues within 4Å: Chain A: T.36, L.37, K.38, D.39, K.42, H.86 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.38, A:D.39 Water bridges: A:K.42 Salt bridges: A:K.42, A:H.86, A:H.86 XP5.4: 9 residues within 4Å: Chain A: L.37, K.38, S.43, V.44, K.47, S.251, Y.253, Y.282, Y.285 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.253 Hydrogen bonds: A:S.43, A:S.251 Water bridges: A:Y.253 Salt bridges: A:K.38, A:K.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, J. et al., The cation-pi box is a specific phosphatidylcholine membrane targeting motif. J.Biol.Chem. (2013)

Release Date

2013-04-10

Peptides

1-phosphatidylinositol phosphodiesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1-phosphatidylinositol phosphodiesterase

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