SMTL ID : 4i9t.1

Structure of the H258Y mutant of the phosphatidylinositol-specific phospholipase C from Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: L.37, K.38, D.39, K.42, H.86 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.38, A:D.39 Salt bridges: A:K.42, A:H.86

2 x INS: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE(Non-covalent)

INS.2: 9 residues within 4Å: Chain A: H.30, D.31, R.67, K.113, R.166, W.185, D.206, Y.208, F.239 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.31, A:R.67, A:R.67, A:R.166, A:R.166, A:D.206 Water bridges: A:H.30, A:K.113, A:K.113, A:D.206, A:S.241 INS.3: 5 residues within 4Å: Chain A: D.50, K.51, G.284, Y.285, T.286 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.50, A:K.51, A:K.51, A:Y.285, A:T.286 Water bridges: A:Y.285, A:Y.285, A:T.286

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 6 residues within 4Å: Chain A: Y.253, S.257, Y.258, P.261, W.287, Y.290 No protein-ligand interaction detected (PLIP) PGE.5: 4 residues within 4Å: Chain A: K.47, Y.253, Y.282, Y.285 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.47, A:K.47 Water bridges: A:S.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, J. et al., The cation-pi box is a specific phosphatidylcholine membrane targeting motif. J.Biol.Chem. (2013)

Release Date

2013-04-10

Peptides

1-phosphatidylinositol phosphodiesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1-phosphatidylinositol phosphodiesterase